CF810562
Information for CF810562
| Name | CF810562 |
|---|---|
| Accession | ID1707 |
| Length | 586 bp |
| Type | EST |
| Organism | highbush blueberry (Vaccinium corymbosum) |
| Library |
LIBEST_014530 cDNA cold acclimated Bluecrop library |
| Is singlet in |
Vaccinium corymbosum unigene v1 |
| NCBI Accession | CF810562 |
| Sequence |
|---|
| GCGTCGCAGAGAAATACATACGCCGCCTAGTTCGAACTTAGGTCTCTCGGAGTTGATCCA AAAGAGAGCAAAAGGGGGCAGAAAATTGCCTCGCAACAATGTTGTTCTTCTCGTATTTCA AGGACCTAGTGGGCAGAGAAGTGACTGTTGAACTGAAGAACGATCTAGCCATTCGTGGCA CTCTGCATTCTGTTGACCAGTATCTCAATATTAAGCTTGAGAACACTAGGGTTGTCGATC AAGACAAGTATCCCCACATGCTGTCAGTGAGGAACTGTTTTATCAGAGGATCTGTGGTGA GGTATGTCCAGTTACCTCCGGATGGAGTTGACATTGAACTGCTTCATGATGCCACAAGAA GAGAAGCTCGCGGCAGCTGAAATTCTACAGTGAAGAATCCTCTGTAATTTTCATTTCAAG TTGAGATGTATTTGTAGTATTTGTTTCTGGCTTTGGATAAACCTTTCGCATTTCCAATGG CTTGAAGTTATACATTAGGTACTTTTGAGTTTGTGTGTGTGTGTGAGGAAAGGTTGAACT TAAAAAATTCATTACTTCAGAGGAAGCAGATAGGTTTCTCTGTTCT |
Download sequence in fasta format





KEGG Analysis
| Analysis Date: 01-18-2011
(KEGG analysis for Vaccinium corymbosum unigene v1) K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 |
InterProScan Analysis
Analysis Date: 01-18-2011
(InterProScan analysis for Vaccinium corymbosum unigene v1)
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Poplar (P. trichocarpa) homologs
Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Query: CF810562
Best 10 Hits Shown
Query: CF810562
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
POPTR_0003s01050 | 8.94e-47 | 95.65% | POPTR_0003s01050.1 |
|
HSP 1
Score: 183.341 bits (464), Expect = 8.93783e-47 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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POPTR_0004s22870 | 3.10e-15 | 87.80% | POPTR_0004s22870.1 |
|
HSP 1
Score: 78.5666 bits (192), Expect = 3.10052e-15 Query: 252 PHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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Peach (P. persica) homologs
Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Query: CF810562
Best 10 Hits Shown
Query: CF810562
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
ppa013967m | 1.10e-46 | 95.65% | ppa013967m |
|
HSP 1
Score: 182.57 bits (462), Expect = 1.09552e-46 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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Swissprot homologs
Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Query: CF810562
Best 10 Hits Shown
Query: CF810562
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
LSM2_MOUSE | 1.61e-32 | 74.44% | U6 snRNA-associated Sm-like protein LSm2... |
|
HSP 1
Score: 139.043 bits (349), Expect = 1.61374e-32 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA 368 |
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LSM2_HUMAN | 1.61e-32 | 74.44% | U6 snRNA-associated Sm-like protein LSm2... |
|
HSP 1
Score: 139.043 bits (349), Expect = 1.61374e-32 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA 368 |
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LSM2_DICDI | 5.74e-30 | 67.03% | Probable U6 snRNA-associated Sm-like pro... |
|
HSP 1
Score: 130.568 bits (327), Expect = 5.73958e-30 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR 371 |
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LSM2_YEAST | 2.95e-26 | 66.29% | U6 snRNA-associated Sm-like protein LSm2... |
|
HSP 1
Score: 118.242 bits (295), Expect = 2.94776e-26 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE 365 |
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LSM2_SCHPO | 4.26e-25 | 64.04% | U6 snRNA-associated Sm-like protein LSm2... |
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HSP 1
Score: 114.39 bits (285), Expect = 4.25656e-25 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE 365 |
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LSM2_ENTBH | 9.21e-12 | 39.56% | Probable U6 snRNA-associated Sm-like pro... |
|
HSP 1
Score: 70.0922 bits (170), Expect = 9.206e-12 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATR 359 |
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LSM2_ENCCU | 1.80e-07 | 34.67% | Probable U6 snRNA-associated Sm-like pro... |
|
HSP 1
Score: 55.8398 bits (133), Expect = 1.79666e-07 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 323 |
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TrEMBL homologs
Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Query: CF810562
Best 10 Hits Shown
Query: CF810562
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
D7TPA7_VITVI | 9.25e-46 | 96.84% | Whole genome shotgun sequence of line PN... |
|
HSP 1
Score: 186.808 bits (473), Expect = 9.25429e-46 Query: 90 LATMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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A9PD52_POPTR | 1.02e-44 | 95.65% | Predicted protein OS=Populus trichocarpa... |
|
HSP 1
Score: 183.341 bits (464), Expect = 1.02318e-44 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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B9SFP2_RICCO | 1.34e-44 | 97.80% | Speckle-type POZ protein, putative OS=Ri... |
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HSP 1
Score: 182.956 bits (463), Expect = 1.33632e-44 Query: 102 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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A9PBV8_POPTR | 3.89e-44 | 94.57% | Putative uncharacterized protein OS=Popu... |
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HSP 1
Score: 181.415 bits (459), Expect = 3.88808e-44 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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Q9ZVT4_ARATH | 1.13e-43 | 90.63% | F15K9.7 protein OS=Arabidopsis thaliana ... |
|
HSP 1
Score: 179.874 bits (455), Expect = 1.13126e-43 Query: 87 CLATMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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Q1H595_ARATH | 1.48e-43 | 94.57% | At1g03330 OS=Arabidopsis thaliana GN=At1... |
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HSP 1
Score: 179.489 bits (454), Expect = 1.47747e-43 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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D7KCE0_ARALY | 1.48e-43 | 94.57% | Putative uncharacterized protein OS=Arab... |
|
HSP 1
Score: 179.489 bits (454), Expect = 1.47747e-43 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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B8BAV8_ORYSI | 2.52e-43 | 92.55% | Putative uncharacterized protein OS=Oryz... |
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HSP 1
Score: 178.718 bits (452), Expect = 2.52018e-43 Query: 93 ATMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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Q0J7Y5_ORYSJ | 7.33e-43 | 93.48% | Os08g0154700 protein OS=Oryza sativa sub... |
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HSP 1
Score: 177.178 bits (448), Expect = 7.33261e-43 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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C5YGY2_SORBI | 7.33e-43 | 93.48% | Putative uncharacterized protein Sb07g00... |
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HSP 1
Score: 177.178 bits (448), Expect = 7.33261e-43 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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Grape (V. vinifera) homologs
Analysis Date: 01-25-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Query: CF810562
Best 10 Hits Shown
Query: CF810562
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
GSVIVT01011077001 | 4.98e-48 | 96.84% | GSVIVT01011077001 assembled CDS |
|
HSP 1
Score: 186.808 bits (473), Expect = 4.97513e-48 Query: 90 LATMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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Arabidopsis (A. thaliana) homologs
Analysis Date: 02-10-2011 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Query: CF810562
Best 10 Hits Shown
Query: CF810562
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
AT1G03330.1 | 1.14e-45 | 94.57% | Small nuclear ribonucleoprotein family ... |
|
HSP 1
Score: 179.489 bits (454), Expect = 1.13768e-45 Query: 99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374 |
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| Related info for CF810562 |
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