CF810606

Information for CF810606

NameCF810606
AccessionID2584
Length352 bp
TypeEST
Organism highbush blueberry (Vaccinium corymbosum)
Library LIBEST_014530 cDNA cold acclimated Bluecrop library
Is singlet in Vaccinium corymbosum unigene v1
NCBI Accession CF810606
Sequence
GTTTTTGTCCTGATATCATTTGGTTGGTCAACGGCGAGGAAAATTAGGGAAGTTGGTGTG
AACCTGGTTCTCCAGGGTTTACCTTCTTTGTTTTATTACCAAGAGTACAGCTTGAGTTTG
GACAACCCAGATTCATTTCAGTTCGGACATTGTTGAACTGAAATCCTCACATGCACCTGT
TTATTTATTGGTATGGATTTCAATTTGGTCAGCAGTCTTCTAATGGATTGTGTTTTGGTG
AGCAGGTAATTGCTGGTTTGTGGGTTCTATCAATCTTGGGAGGTTGTTGCAGTTTCTTGA
CATTGTTCTACATANCTTTCGTACTGCTACACACGGNGCCCGTAATATATGA
Download sequence in fasta format

GO terms assigned to this feature

Accession Category Term
GO:0005783 cellular_component endoplasmic reticulum

InterProScan Analysis

Analysis Date: 01-18-2011 (InterProScan analysis for Vaccinium corymbosum unigene v1)
SEQUENCE: CF810606_3_ORF2 CRC64: 27F40352575441FA LENGTH: 63 aa
InterPro
IPR003388
Family
Reticulon
PTHR10994 [28-63]T 2.7e-09 PTHR10994 RETICULON/NOGO RETICULON/NOGO
PF02453 [28-63]T 6.4e-10 PF02453 Reticulon Reticulon
PS50845 [28-63]T 11.573 PS50845 RETICULON RETICULON
noIPR
unintegrated
unintegrated
PTHR10994:SF27 [28-63]T 2.7e-09 PTHR10994:SF27 RETICULON-RELATED (PLANT) RETICULON-RELATED (PLANT)

Poplar (P. trichocarpa) homologs

Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Query: CF810606
Best 10 Hits Shown

Match Name E value Identity Description
POPTR_0002s166901.74e-1077.14%POPTR_0002s16690.1
HSP 1 
Score: 61.2326 bits (147), Expect = 1.74475e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            +IAGLWVLSI+G  C FLTLFYI FVLLHT PV+Y
Sbjct:  174 IIAGLWVLSIVGSSCHFLTLFYICFVLLHTVPVLY 208
POPTR_0014s086902.98e-1077.14%POPTR_0014s08690.1
HSP 1 
Score: 60.4622 bits (145), Expect = 2.97609e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWV+SI+G  C FLTLFYI FVLLHT PV+Y
Sbjct:  174 VIAGLWVMSIVGSWCHFLTLFYICFVLLHTVPVLY 208
POPTR_0001s100403.89e-1077.14%POPTR_0001s10040.1
HSP 1 
Score: 60.077 bits (144), Expect = 3.8869e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSI+G  C+F+TLFYI FVLLHT PV Y
Sbjct:  176 VIAGLWVLSIVGSWCNFVTLFYIAFVLLHTVPVFY 210
POPTR_0003s133408.66e-1077.14%POPTR_0003s13340.1
HSP 1 
Score: 58.9214 bits (141), Expect = 8.65911e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSI+G  C+FLTLFYI FVLL+T PV Y
Sbjct:  172 VIAGLWVLSIVGSWCNFLTLFYIAFVLLYTVPVFY 206
POPTR_0015s057101.48e-0974.29%POPTR_0015s05710.4
HSP 1 
Score: 58.151 bits (139), Expect = 1.47702e-09
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGL VLS++G CC+FLTL YI FVLLHT PV+Y
Sbjct:  176 VIAGLLVLSLVGSCCNFLTLLYISFVLLHTVPVLY 210
POPTR_0015s057101.48e-0974.29%POPTR_0015s05710.1
HSP 1 
Score: 58.151 bits (139), Expect = 1.47702e-09
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGL VLS++G CC+FLTL YI FVLLHT PV+Y
Sbjct:  185 VIAGLLVLSLVGSCCNFLTLLYISFVLLHTVPVLY 219

Peach (P. persica) homologs

Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Query: CF810606
Best 10 Hits Shown

Match Name E value Identity Description
ppa008259m 6.79e-1182.86%ppa008259m
HSP 1 
Score: 62.003 bits (149), Expect = 6.79451e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSI+G  C+FLTLFYI FVLLHT PVIY
Sbjct:  263 VIAGLWVLSIVGTWCNFLTLFYISFVLLHTVPVIY 297
ppa010065m 3.16e-0871.43%ppa010065m
HSP 1 
Score: 53.1434 bits (126), Expect = 3.15617e-08
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIA LW+LS++G   +FLTLFYI FVLLHT PVIY
Sbjct:  187 VIAILWILSVVGKWFNFLTLFYITFVLLHTLPVIY 221
ppa010481m 5.95e-0754.29%ppa010481m
HSP 1 
Score: 48.9062 bits (115), Expect = 5.95228e-07
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            V+A LWV +++G  C+FLT+ YI FV  HT PV+Y
Sbjct:  170 VVASLWVAAVIGSWCNFLTVLYIGFVAAHTLPVLY 204
ppa010244m 7.77e-0771.43%ppa010244m
HSP 1 
Score: 48.521 bits (114), Expect = 7.77391e-07
Identity = 25/35 (71.43%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSILG   +FLTL YI  VLL T PV Y
Sbjct:  180 VIAGLWVLSILGKWYNFLTLVYIVVVLLFTLPVFY 214

Swissprot homologs

Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Query: CF810606
Best 10 Hits Shown

Match Name E value Identity Description
RTNLB_ARATH2.32e-0776.47%
Reticulon-like protein B2 OS=Arabidopsis...
HSP 1 
Score: 54.299 bits (129), Expect = 2.31898e-07
Identity = 26/34 (76.47%), Postives = 27/34 (79.41%), Query Frame = 3
Query:  249 IAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            IAGLWVLSILGGC SFLTL YI  VLL T P+ Y
Sbjct:  194 IAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFY 227
RTNLD_ARATH3.03e-0771.43%
Reticulon-like protein B4 OS=Arabidopsis...
HSP 1 
Score: 53.9138 bits (128), Expect = 3.02868e-07
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSI+G C +FLTLFY   VLL T PV+Y
Sbjct:  176 VIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLY 210
RTNLA_ARATH6.75e-0773.53%
Reticulon-like protein B1 OS=Arabidopsis...
HSP 1 
Score: 52.7582 bits (125), Expect = 6.7472e-07
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 3
Query:  249 IAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            IAGLWVLSILGGC +FLTL YI  VLL T P+ Y
Sbjct:  198 IAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAY 231

TrEMBL homologs

Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Query: CF810606
Best 10 Hits Shown

Match Name E value Identity Description
D7UCH9_VITVI4.02e-1085.71%
Whole genome shotgun sequence of line PN...
HSP 1 
Score: 67.781 bits (164), Expect = 4.02136e-10
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            +IAGLWVLSILG CC+FLTLFYI FVLLHT PVIY
Sbjct:  177 IIAGLWVLSILGSCCNFLTLFYITFVLLHTVPVIY 211
B3TLN1_ELAGV2.00e-0982.86%
24 kDa seed maturation protein OS=Elaeis...
HSP 1 
Score: 65.4698 bits (158), Expect = 1.99578e-09
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSILG CC+FLTLFYI FV LHT PV+Y
Sbjct:  177 VIAGLWVLSILGSCCNFLTLFYILFVTLHTVPVLY 211
Q2PYX0_SOLTU9.90e-0982.86%
Putative 24 kDa seed maturation protein-...
HSP 1 
Score: 63.1586 bits (152), Expect = 9.90494e-09
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSILG C +FLTLFYI FVLLHT PV+Y
Sbjct:  177 VIAGLWVLSILGNCWNFLTLFYICFVLLHTVPVLY 211
B3TLV6_ELAGV1.69e-0877.14%
24 kDa seed maturation protein OS=Elaeis...
HSP 1 
Score: 62.3882 bits (150), Expect = 1.68953e-08
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSI+G CC+FL LFYI FV LHT PV+Y
Sbjct:  174 VIAGLWVLSIVGSCCNFLALFYIAFVTLHTVPVLY 208
A2Y6P9_ORYSI2.21e-0871.43%
Putative uncharacterized protein OS=Oryz...
HSP 1 
Score: 62.003 bits (149), Expect = 2.20659e-08
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            V+AGLWVLS+LG CC+FLTLFYI F++L+T PV+Y
Sbjct:  174 VVAGLWVLSVLGSCCNFLTLFYIVFMVLYTVPVLY 208
Q9AWY7_ORYSJ2.88e-0871.43%
Putative uncharacterized protein OS=Oryz...
HSP 1 
Score: 61.6178 bits (148), Expect = 2.8819e-08
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLW+LS+LG CC+FLTL YI FV+LHT P++Y
Sbjct:  202 VIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVPILY 236
Q0JPF1_ORYSJ2.88e-0871.43%
Os01g0226300 protein (Fragment) OS=Oryza...
HSP 1 
Score: 61.6178 bits (148), Expect = 2.8819e-08
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLW+LS+LG CC+FLTL YI FV+LHT P++Y
Sbjct:  101 VIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVPILY 135
B6TGL5_MAIZE2.88e-0874.29%
Putative uncharacterized protein OS=Zea ...
HSP 1 
Score: 61.6178 bits (148), Expect = 2.8819e-08
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLW+LS+LG CC+FLTLFYI FV L+T PV+Y
Sbjct:  180 VIAGLWLLSVLGSCCNFLTLFYIVFVALYTVPVLY 214
A2WMA1_ORYSI2.88e-0871.43%
Putative uncharacterized protein OS=Oryz...
HSP 1 
Score: 61.6178 bits (148), Expect = 2.8819e-08
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLW+LS+LG CC+FLTL YI FV+LHT P++Y
Sbjct:  202 VIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVPILY 236
B9RCJ7_RICCO3.76e-0880.00%
Putative uncharacterized protein OS=Rici...
HSP 1 
Score: 61.2326 bits (147), Expect = 3.76387e-08
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSI+G  C+FLTLFYI FVLLHT PV Y
Sbjct:  182 VIAGLWVLSIVGSWCNFLTLFYIAFVLLHTVPVFY 216

Grape (V. vinifera) homologs

Analysis Date: 01-25-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Query: CF810606
Best 10 Hits Shown

Match Name E value Identity Description
GSVIVT010270080011.09e-1285.71%GSVIVT01027008001 assembled CDS
HSP 1 
Score: 67.781 bits (164), Expect = 1.08625e-12
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            +IAGLWVLSILG CC+FLTLFYI FVLLHT PVIY
Sbjct:  177 IIAGLWVLSILGSCCNFLTLFYITFVLLHTVPVIY 211
GSVIVT010194400011.33e-1077.14%GSVIVT01019440001 assembled CDS
HSP 1 
Score: 60.8474 bits (146), Expect = 1.32786e-10
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWV+SI+G  C+FLTLFYI FVLLHT PV+Y
Sbjct:  174 VIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVLY 208
GSVIVT010287960012.50e-0971.43%GSVIVT01028796001 assembled CDS
HSP 1 
Score: 56.6102 bits (135), Expect = 2.50423e-09
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            V AGLWVLS +G  C+F+TLFY+ FVLLHT PVIY
Sbjct:  176 VTAGLWVLSAVGRWCNFITLFYLLFVLLHTVPVIY 210

Arabidopsis (A. thaliana) homologs

Analysis Date: 02-10-2011 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Query: CF810606
Best 10 Hits Shown

Match Name E value Identity Description
AT4G11220.1 1.78e-0876.47%
VIRB2-interacting protein 2 | chr4:6838...
HSP 1 
Score: 54.299 bits (129), Expect = 1.78342e-08
Identity = 26/34 (76.47%), Postives = 27/34 (79.41%), Query Frame = 3
Query:  249 IAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            IAGLWVLSILGGC SFLTL YI  VLL T P+ Y
Sbjct:  194 IAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFY 227
AT5G41600.1 2.33e-0871.43%
VIRB2-interacting protein 3 | chr5:1663...
HSP 1 
Score: 53.9138 bits (128), Expect = 2.32921e-08
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLSI+G C +FLTLFY   VLL T PV+Y
Sbjct:  176 VIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLY 210
AT4G23630.1 5.19e-0873.53%
VIRB2-interacting protein 1 | chr4:1231...
HSP 1 
Score: 52.7582 bits (125), Expect = 5.18895e-08
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 3
Query:  249 IAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            IAGLWVLSILGGC +FLTL YI  VLL T P+ Y
Sbjct:  198 IAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAY 231
AT1G64090.2 1.97e-0768.57%
Reticulan like protein B3 | chr1:237893...
HSP 1 
Score: 50.8322 bits (120), Expect = 1.9718e-07
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLS +G  C+FLTL YI  VLL T PV+Y
Sbjct:  188 VIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLY 222
AT1G64090.1 1.97e-0768.57%
Reticulan like protein B3 | chr1:237893...
HSP 1 
Score: 50.8322 bits (120), Expect = 1.9718e-07
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            VIAGLWVLS +G  C+FLTL YI  VLL T PV+Y
Sbjct:  172 VIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLY 206
AT3G10260.3 2.58e-0737.50%
Reticulon family protein | chr3:3171413...
HSP 1 
Score: 50.447 bits (119), Expect = 2.57525e-07
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 3
Query:  195 GFQFGQQSSNGLCFGEQV------------IAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            G   G++ + GL F + +            + GLWV +++G CC+FLT+ YI FV  HT PV+Y
Sbjct:  160 GVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLY 223
AT3G10260.2 2.58e-0737.50%
Reticulon family protein | chr3:3171413...
HSP 1 
Score: 50.447 bits (119), Expect = 2.57525e-07
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 3
Query:  195 GFQFGQQSSNGLCFGEQV------------IAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            G   G++ + GL F + +            + GLWV +++G CC+FLT+ YI FV  HT PV+Y
Sbjct:  140 GVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLY 203
AT3G10260.1 2.58e-0737.50%
Reticulon family protein | chr3:3171413...
HSP 1 
Score: 50.447 bits (119), Expect = 2.57525e-07
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 3
Query:  195 GFQFGQQSSNGLCFGEQV------------IAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            G   G++ + GL F + +            + GLWV +++G CC+FLT+ YI FV  HT PV+Y
Sbjct:  140 GVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLY 203
AT2G46170.1 4.39e-0754.29%
Reticulon family protein | chr2:1896541...
HSP 1 
Score: 49.6766 bits (117), Expect = 4.39271e-07
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            V+ GLW++S++G   +FLTL YI FV+LHT P++Y
Sbjct:  176 VVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLY 210
AT3G61560.1 9.79e-0754.29%
Reticulon family protein | chr3:2277791...
HSP 1 
Score: 48.521 bits (114), Expect = 9.78593e-07
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  246 VIAGLWVLSILGGCCSFLTLFYIXFVLLHTXPVIY 350
            V+ GLW++S++G   +FLTL YI FV+LHT P++Y
Sbjct:  176 VVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLY 210
Related info for CF810606