Vaccinium_corymbosum_v1_Contig480
Information for Vaccinium_corymbosum_v1_Contig480
| Name | Vaccinium_corymbosum_v1_Contig480 |
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| Accession | ID4460 |
| Length | 746 bp |
| Type | contig |
| Organism | highbush blueberry (Vaccinium corymbosum) |
| Sequence |
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| CACCGCCATTCCTGTTCAAGTTATTCTTGCTGGGGTGTGTTTTCAGATATCTGAAGGTCC TTGTTCGGGTTCTCGAGAATTTCTTGAGGAATTTCTTAGCAAGTGGAGATACGTTGATGA ACTATACTATGTTCTTGCCGTTGCGGAATCAAATGTGGGTTGTGTAGAAGCATCTGGAGG GCATTTGATGCTATGTGTTGATGAGTACCTGGAAGTTGTTGAGGTCTATGTGGTAAAACT TGCGATGGTATTGAAAGATGTAGACCGTGCTATCGCTTGGGTTGAGAAGGCAGAATTACC TGAGGAAAAGCGGCAGGAACTTTTGAGGAGATTACATAGTCTTTATTCTCCTAAGCCGAC TGGGTCATCACAAGGCTCTATTGTTGCTTTTCCAGAAGATGAACGCGAACAATTTACATC TGGGGGATCTCCAGAAGCATTGAAAACCTCGTACCCATCCAAAGAAAAGAAAGATATGAA ACAAGTAATTCTGAAATTATCACAAGAAAGAGTCCCTTGCTTTTGGTGGTTTCGTACTGT CACTTTGAAGTTTGGAAATGGTCAGCTGCTCATATCAAATGGGAAAATTGTGCTGGGCTG TTTGGTGATTCTTATGTATTATGTCTTGCGAAGGAAGCAGGCGACAGTGAAGAGGATTCT AAGAAGACAAGCTTTGTCCATGAAGAAGGCCTTAGTGGACTTGTGGCAGCTTGCATTTTC TTACCAAGTGAACCCTCTTGCTGCTG |
Download sequence in fasta format




Comprising EST/subcontigs
InterProScan Analysis
Analysis Date: 01-18-2011
(InterProScan analysis for Vaccinium corymbosum unigene v1)
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Peach (P. persica) homologs
Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
ppa024224m | 1.29e-51 | 46.43% | ppa024224m |
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HSP 1
Score: 199.519 bits (506), Expect = 1.29069e-51 Query: 8 IPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDE------REQFTSGGSPEALKTSYPSKEKKDMKQVILKLSQERVPCFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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ppa008336m | 2.08e-25 | 42.86% | ppa008336m |
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HSP 1
Score: 112.464 bits (280), Expect = 2.07501e-25 Query: 8 IPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLML-CXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQFTSGGSPEALKTSYPSKE 466 |
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ppa008348m | 2.08e-25 | 42.86% | ppa008348m |
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HSP 1
Score: 112.464 bits (280), Expect = 2.07501e-25 Query: 8 IPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLML-CXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQFTSGGSPEALKTSYPSKE 466 |
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Poplar (P. trichocarpa) homologs
Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
POPTR_0006s07830 | 1.13e-61 | 50.39% | POPTR_0006s07830.1 |
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HSP 1
Score: 233.417 bits (594), Expect = 1.13273e-61 Query: 2 TAIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLML-CXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQFTSG-------GSPEALKTSYPSKEKKDMKQVILKLSQERVPCFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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TrEMBL homologs
Analysis Date: 01-18-2011 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
B9SXW9_RICCO | 1.11e-62 | 53.33% | Putative uncharacterized protein OS=Rici... |
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HSP 1
Score: 243.817 bits (621), Expect = 1.11261e-62 Query: 5 AIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLML-CXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDE-------REQFTSGGSPEALKTSYPSKEKKDMKQVILKLSQERVPCFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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D7TB19_VITVI | 1.23e-61 | 50.97% | Whole genome shotgun sequence of line PN... |
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HSP 1
Score: 240.35 bits (612), Expect = 1.23014e-61 Query: 2 TAIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLML-CXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPT---GSSQGSIV----AFPEDEREQFTSGGSPEALKTSYP-SKEKKDMKQVILKLSQERVPCFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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B9HBB3_POPTR | 1.50e-59 | 50.39% | Predicted protein OS=Populus trichocarpa... |
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HSP 1
Score: 233.417 bits (594), Expect = 1.50374e-59 Query: 2 TAIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLML-CXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQFTSG-------GSPEALKTSYPSKEKKDMKQVILKLSQERVPCFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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D7L908_ARALY | 1.12e-38 | 42.06% | Putative uncharacterized protein OS=Arab... |
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HSP 1
Score: 164.081 bits (414), Expect = 1.12038e-38 Query: 5 AIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXK---DVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQ-FTSGGSPEALKTSYPSKEKKDMKQVILKLSQERVP-CFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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D7L105_ARALY | 2.50e-38 | 41.67% | Predicted protein OS=Arabidopsis lyrata ... |
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HSP 1
Score: 162.925 bits (411), Expect = 2.49595e-38 Query: 5 AIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXK---DVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQ-FTSGGSPEALKTSYPSKEKKDMKQVILKLSQERVP-CFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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Q8W4B2_ARATH | 1.79e-36 | 40.87% | 3-phosphoinositide-dependent protein kin... |
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HSP 1
Score: 156.762 bits (395), Expect = 1.78871e-36 Query: 5 AIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXK---DVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQ-FTSGGSPEALKTSYPSKEKKDMKQVILKLSQERVP-CFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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Q9LPP1_ARATH | 4.12e-33 | 39.43% | 3-phosphoinositide-dependent protein kin... |
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HSP 1
Score: 145.591 bits (366), Expect = 4.12366e-33 Query: 5 AIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXK---DVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQ-FTSGGSPEALKTSYPSKEKKDMKQVILKLSQERVP-CFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQ 727 |
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C6TG98_SOYBN | 8.05e-29 | 39.17% | Putative uncharacterized protein (Fragme... |
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HSP 1
Score: 131.339 bits (329), Expect = 8.04782e-29 Query: 5 AIPVQVILAGVCFQISEGPCSGS---REFLEEFLSKWRYVDELYY-VLAVAESNVGCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDE------REQFTSGGSPEALKTSYPSKEKKDMKQVILKLSQERVPCFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYV 625 |
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C0PL18_MAIZE | 8.90e-28 | 32.82% | Putative uncharacterized protein OS=Zea ... |
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HSP 1
Score: 127.872 bits (320), Expect = 8.89791e-28 Query: 5 AIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNV--GCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQFTSGGSPEALKTSYPSKEK-----KDMKQVILKLSQERV-------PCFWWFRTVTLKFGNGQLLISNGKIV-LGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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Q5Z824_ORYSJ | 2.86e-26 | 30.83% | 3-phosphoinositide-dependent protein kin... |
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HSP 1
Score: 122.865 bits (307), Expect = 2.86236e-26 Query: 5 AIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAE--SNVGCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSP-KPTGSSQGSIVAFPEDEREQFTSGGS-----PEALKTSYPSKE----------KKDMKQVILKLSQERVPCFWWFRTVTLKFGNGQLLISNGKIV-LGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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Grape (V. vinifera) homologs
Analysis Date: 01-25-2011 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
GSVIVT01000235001 | 5.63e-64 | 50.97% | GSVIVT01000235001 assembled CDS |
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HSP 1
Score: 240.35 bits (612), Expect = 5.62789e-64 Query: 2 TAIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLML-CXXXXXXXXXXXXXXXXXXXKDVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPT---GSSQGSIV----AFPEDEREQFTSGGSPEALKTSYP-SKEKKDMKQVILKLSQERVPCFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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Arabidopsis (A. thaliana) homologs
Analysis Date: 02-10-2011 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
Query: Vaccinium_corymbosum_v1_Contig480
Best 10 Hits Shown
| Match Name | E value | Identity | Description |
|---|---|---|---|
AT3G10572.1 | 1.19e-38 | 40.87% | 3-phosphoinositide-dependent protein ki... |
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HSP 1
Score: 156.762 bits (395), Expect = 1.18509e-38 Query: 5 AIPVQVILAGVCFQISEGPCSGSREFLEEFLSKWRYVDELYYVLAVAESNVGCVEASGGHLMLCXXXXXXXXXXXXXXXXXXXK---DVDRAIAWVEKAELPEEKRQELLRRLHSLYSPKPTGSSQGSIVAFPEDEREQ-FTSGGSPEALKTSYPSKEKKDMKQVILKLSQERVP-CFWWFRTVTLKFGNGQLLISNGKIVLGCLVILMYYVLRRKQATVKRILRRQALSMKKALVDLWQLAFSYQVNPLAA 745 |
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