Expression: V. corymbosum cv. Draper Tissue during Fruit Development, FPKM

Overview
Analysis NameExpression: V. corymbosum cv. Draper Tissue during Fruit Development, FPKM
MethodIllumina HiSeq 4000 (HTSeq, DeSeq2)
SourcePRJNA494180
Date performed2019-08-02

This data is from the manuscript: Colle M, Leisner CP, Wai CM, Ou S, Bird KA, Wang J, Wisecaver JH, Yocca AE, Alger EI, Tang H, Xiong Z, Callow P, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Song GQ, Childs KL, Schilmiller A, Vorsa N, Buell CR, VanBuren R, Jiang N, Edger PP. Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. GigaScience. 2019 Jan 31.  NCBI BioProject 494180.  Expression values are in FPKM.

 

Sample Tissue Development stage Additonal information
Vc-petal_fall Fruit Petal fall  
Vc-shoot Shoot Young  
Vc-root Root Secondary root  
Vc-root_salt-treated Root Secondary root  
Vc-ripe_fruit Fruit Ripe  
Vc-pink_fruit Fruit Pink  
Vc-green_fruit Fruit Green  
Vc-leaf_MJ-treated_1hr Leaf Young 1 hour after methyl-jasmonate treatment
Vc-leaf_MJ-treated_8hr Leaf Young 8 hours after methyl-jasmonate treatment
Vc-leaf_MJ-treated_24hr Leaf Young 24 hours after methyl-jasmonate treatment
Vc-leaf_night Leaf Young Collected at 12 AM
Vc-leaf_day Leaf Young Collected at 12 PM
Vc-flower_at_anthesis Flower Anthesis  
Vc-flower_bud Flower Bud  
Properties
Additional information about this analysis:
Property NameValue
Analysis expression organism id13
Analysis expression associated analysis id49
Analysis expression biosourceprovider id
Analysis expression arraydesign id
Analysis expression assaydate2019-8-2 00:00:00
Analysis expression assay description
Analysis expression acquisitiondate2019-8-2 00:00:00
Analysis expression acquisition uri
Analysis expression quantificationdate2019-8-2 00:00:00
Analysis expression quantification uri
Analysis expression assay protocol id0
Analysis expression acquisition protocol id0
Analysis expression quantification protocol id0
Analysis expression assay operator id
Analysis expression quantification operator id
Analysis expression filetypemat
Analysis expression submit job1
Analysis expression fileext
Analysis expression filepath/mainlab/research/vaccinium/DraperGenome2019/V_corymbosum_different_tissue_type_FPKM-edited.txt
Analysis expression re start
Analysis expression re end
Analysis expression feature uniquenamesname