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Transcript Overview
Name | CUFF.30663.3 |
Unique Name | CUFF.30663.3_V_corymbosum_May2013_v1 |
Type | mRNA |
Organism | Vaccinium corymbosum (northern highbush blueberry) |
Sequence length | 1510 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
InterPro
Analysis Name: BLAST: V. corymbosum W8520 draft genome, Swissprot
Date Performed: 2019-08-06
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR040663 | DNA polymerase delta subunit, OB-fold domain | PFAM | PF18018 | DNA_pol_D_N | coord: 1..77 e-value: 3.7E-21 score: 75.6 |
None | No IPR available | GENE3D | 3.60.21.50 | | coord: 84..354 e-value: 6.5E-111 score: 372.5 |
None | No IPR available | GENE3D | 2.40.50.430 | | coord: 1..82 e-value: 4.7E-22 score: 80.1 |
IPR007185 | DNA polymerase alpha/delta/epsilon, subunit B | PFAM | PF04042 | DNA_pol_E_B | coord: 98..306 e-value: 1.5E-47 score: 161.7 |
IPR041863 | DNA polymerase delta subunit 2, C-terminal domain | CDD | cd07387 | MPP_PolD2_C | coord: 97..349 e-value: 1.40936E-143 score: 404.715 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >CUFF.30663.3_V_corymbosum_May2013_v1 ID=CUFF.30663.3_V_corymbosum_May2013_v1; Name=CUFF.30663.3; organism=Vaccinium corymbosum; type=mRNA; length=1510bp CAGTCTGCACAGTTTTGGGATTGGAACAAGGCAAGGAATGCATAATTGTT GGAACCCTCTACAAGCACATGAAGCTCAAACCTACCATTCTTGACGAGTA CTCTAAGGAGGGATCTGCAGCCCCACTTGTAAAGCCTCACAATTTTACAC ACCCAGATGATCATTTGGTTCTGGAAGATGAGAGTGGAAGAGTTAAACTT CGTGGAAACGTCCTCCTACCTTCTGTGTACGTAACAGGGATTGTGGTTGC ATTGCATGGGAAAGAAACTGATGCTGGTGATTTTTGGGTTGAAGATATCC TGGAAGCTGGCTTACCAGAGCAGATTGAGCTACCACTTAAATCAGGGGAA GACAAATATGTTGTTTTTGTATCGGGGTTGAGTGTAGGAAGCAGTACTTC TAACCCTCTCCAGTTCCAGCTTCTTGTTGATCACATAACGGGATATCTAG GGGATGAGAAGGAACTAAGTATTGCATCTCAAATAGTTCAAGTAGTAATT GCTGGAAATTCTGTTGAGATTCCTGGTGGACTTCTCAGTGGTCAGGATTT GGCTTCAAAGGATCAGTCTAAATTGTCTGAACCAGTCAAAGAGCTGGATA TCTTGTTGACTCAGGTTGCAGCTGGTGTACCTTTGGATATAATGCCAGGA CCTAATGACCCGGCAAATTTTGCCTTGCCGCAGCAGGCTTTGCACAGATG TCTTTTTCCAGGTTCATCAGCTTATAACACTTTCAAATCCTGTACAAATC CGCACTCTTTCGAGCTTGACAATACTAGGTTTCTTGGAACATCGGGGCAG AATATTGATGATCTCGAGAAATATTCCGAGGCAAAAGATAAGCTTGAATT TATGGAGCGCACATTGAGGTGGAGACATATTGCACCAACTGCCCCGAATA CCCTTGGGTGTTATCCCTTCACTGATAGGGATCCTTTCTTTGTTGAGAGA TGTCCCCACGTTTACTTTGTTGGTAATCAGGATAGATATGAGACTCGCAT AATAAAGGGATCAGAGGGGCAAGTTGTAAGACTTATATGCATTCCTCGAT TTGGTGAGACAGGGATTGCTGTTGTGGTAAACATGAGAAATCTTGAATGC CACGCTCTCAGTTTTGGGACTGAATTCAGCTCCTAGGAGAATTTTTCGCA TGTCTACTTCAAAGCTGCAGGAGTTGCAACAGTTGTTTCCAGTTTCTGCC GCGGCTGTGAAGAAGATTCAATTGTGAAAGCTGAAAAGATGGAAACTGTC AAAAACTCAAGCTGGAGAAACTGCTGTTCTCTTTTTGCTGCTTTTTCTTT GTTTGATTGTAGGTTTGGTTTCCTAATTGAAGTGGTTTTCCATGTATGAG TGAATGTGTAATTCAATTAACATATCTTTGTTAGTCAATTTGTATCAGTT CTGATATAAGACGTTTGTTTACTTTGATAAAATTGTCGTATGGTAAACAT GAACGCATTGGGATGTGAAGATCCTTTGATAATATGATAGATAATGACTG ATAGTATTCT back to topmRNA from alignment at scaffold00846:50302..58437- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >CUFF.30663.3_V_corymbosum_May2013_v1 ID=CUFF.30663.3_V_corymbosum_May2013_v1; Name=CUFF.30663.3; organism=Vaccinium corymbosum; type=mRNA; length=8136bp; location=Sequence derived from: scaffold00846:50302..58437- (Vaccinium corymbosum CACAGTCTGCACAGTTTTGGGATTGGAACAAGGCAAGGAATGCATAATTG
TTGGAACCCTCTACAAGCACATGAAGCTCAAACCTACCATTCTTGACGAG
TACTCTAAGGAGGTACTTAACTGTCGGGATGTGTTCATTTCTTTTTAGTT
TCCCTTCTCTTCCTCTTGCCTTGCTTTTAGGAGATTGAGATTTACGTGGA
AAATTAGTGTGGTTATTTTTGTCTGATTTTTTTTCATATACAGAGATCTG
CAGCCCCACTTGTAAAGCCTCACAATTTTACACACCCAGATGATCATTTG
GTTCTGGAAGATGAGAGTGGAAGAGTTAAACTTCGTGGAAACGTCCTCCT
ACCTTCTGTGTACGTAACAGGTATTTATAATGAACTGCTTATCGGTTACT
ACCTTTATGAAGTTGGAAACATCTCTCAAGATGGTGTGGTAGTCTGCTTG
AATATTTTTTGTGGGTGAAGCAATCAAGGGCATGAACGTGAAATTCCTGT
TGTATGTTATGTCAAGTGTAGTCTATCGGTAGTCTTTTATGTGAGCTTCC
TCACTGTTCTTTCCTCTTGAAAAGGTTCTCAACTGTTGACATGCAATGAA
GTGTAATTTCTGTGAAAACAATAGGCGGGCGTAGTTAACATCCGGACATT
TTGTATGTTTACTGTCAATGGGACGGCATGCTTATTGCCAATGGACAGAT
ACAACAGGATGCCCGGTGGGATTTGTCCTCCTGCTTAGTTGGCCCATTGG
GCCAGATACCGAGTTATCAAAAACAAATTATATTACCAATAGTACTTGCT
GATTTATTGATGTACTCTGATACGCATGCTGACATGCCGCACTTGATAGG
GATTGTGGTTGCATTGCATGGGAAAGAAACTGATGCTGGTGATTTTTGGG
TTGAAGATATCCTGGAAGCTGGCTTACCAGAGCAGATTGAGCTACCACTT
AAATCAGGTATCCTGGCACTATCTGGTTAATCTCACCTCCTTTTTTTTTT
TTTTTTAATTCTGTTATTATCTGCAACGCACTTTGCACGGGAGTGCATTT
TTGTTGGTCCATATTCTGTTATACTTTTTTATCAGTATTTGGTGTTATAT
GTTTATTTTATTTAATTTTTTTTCAAACATGTCCTGTACATTAGGGCTTT
CACCTTTTATGGAGATTGAAACCCTTTGCTGCCGGGAAGGACTTGTAAAA
TAATGCCATGGATTTGGGGGTAATATGGGGCCAAATTTTCAGGAGATGGT
TACAGAAAGAAATCACTTGCACAGAAGAAAAGGGCATGTATAATACTAGA
TTGAGATCGTATCAAAACATTTGAGATTGCATTTCATACATAATTTACAA
TTAGCATTGGCTGTGATGTTATGCATTCTAAAATTTGAGTTCAAATCAAG
ACATGCATCTGAAGTCTGAACACAAGCCATCATGTACCTAACCAAATCAA
ACCAATCCGAGTCTTATTTGGGGTTGGACCGGCTGTGTGGAAGATAAGAC
TCTAAGCATGACACATGTGGATTTATCATGTTACCTAGCACGTGGAAAGG
AAGAGTATAGAGATCAAGCCAACTTGATTTTGTTAACTGGAGAAGGCACT
TGAACTGCTATAACATTGGCAAAGAGCTGCTATGTCTGCATGAATATTCT
TGTGCTGTTTTCCGAATTCAATTTGGTCAGTCTTGTTTCTCTTGAGTCTT
GACCTAAAGAGTAAACCATGATCTGTAATTTTCTCAAAATGTTTGATCTT
TTTCTTGATATTTGGATAGTTTGGCTTATGCGTCTATGGAATTGCCACTG
TGTTTTCCTTCGTAGTTACTTTGAAGCGTGTTGCCGACTCTTCCTTTGTA
GTCTTTGTCTGACACCTTTTCATGTTGACTACTTGCAGAGGAAGACAAAT
ATGTTGTTTTTGTATCGGGGTTGAGTGTAGGAAGCAGTACTTCTAACCCT
CTCCAGTTCCAGCTTCTTGTTGATCACATAACGGGATATCTAGGGGATGA
GAAGGTGCATGATGTTTCCTGATCCCTTTTTTCAAACTATTGGATAAACT
AATATGGGGTGACATCTTATCTTTCTTTATAAAACTTGTCTACTGAGCAG
GAACTAAGTATTGCATCTCAAATAGTTCAAGTAGTAATTGCTGGAAATTC
TGTTGAGATTCCTGGTGGACTTCTCAGTGGTCAGGTATCCCGTTTTGGTT
TTCTGTGTGTTTTTTAGATTTGTTTGTTCCAATCTTTATTTGTAATTTTC
TACTGTTCTCTGAGATTCGAGATTCACAGTGTTGTGCCTAGAGAGGGGTC
AATTAGCCAATTGACAATTCTCAATTTGGTCAAATTCAATTCCAACAATT
AACAAACACTACAAGTTCGATAAAATTCCACTAGAAATAAAAGTAAAGAG
ACAAGCGTACACCAAATTTTACATTGAAACCCTTAGGGCTATAACTCGGG
GACCAAAAAAGTGAACCCAACTCCCAAAACAAAAAGGTTAAAGAAATGAC
TTTAAAGGAATTGACCTTACCCTATGTCTACCAAATTCTACGATCCTTCA
TGAGCTCCAAGACATGGTCTTGATTCAATAGCCCCATGAGGAGAGCCACC
TCAACCTCTGCTCTTCAAAAGGCTCTCATTCCCACTTCCCACAACAAAGG
GCAGTTCATAAGACAAGGAGCATATGTATGAAAGTGTTTTTTGGGTCAAT
CACCTCACTCAATGAAAGTGTAGTGAATGTTGCTTAGGTTGAGTTAAATA
CGGAATTCAACTCAAAACTCAAGAGTATGGGGAGGAGGAAATCGCGAGGG
AAAGCTTCGTAACTGCTCTAGAGCTGATATTAATGTCAGAAAAACATGTA
TGATGTAAAAGAGGGTTTGTCAAAGTTTGGGCTGATGAAATTCTGGGCAA
ATCCCGTAGGTGTTCTCAACTCTGGGCTCGAGCTAACTGTCGAGATCATT
TCTGGACTCAATAACAGTAGGGCTGTAGCTCTCTGGTGAGATGACCATCT
TGCTGCTTACCCAGCATTCTTTACCACTTCAAGACGATGCACTTTGGATT
GATGTATTGAAAATTGTTGCCAAAATACCTGAGCAAAATACCATTGCATG
AGACTAAAGGTCAAGTGCTCAATAGACTATAGAGCATGTACCTCTAGCTA
TGGCGTAGCTCGGTTGGTTGTGGCACATCCATGCATCCATCTGTGTTAGT
TCAGCCTATTGCTTCCAAATTTCCTGTGAGACAAAACAAGGCCTTCAATA
AGAATTTTGGTACTTAACTAAGTTTTTGTCAGTTAGAAGGTCCCTACTTC
CTACCTTGGCTTATGGGTTCCTATTTCTTCTTTAAAGTTCTAACTCGACG
CACATTTATTTCCACAATAATCTGTACTTCCTGCAACATGATCAAACTGT
GCTCCATATCACAATTGCTACTTTCACCTTCACCCTCAATGGAATGATAA
TGCTACCTTAGAATTGTTGGCACCAATAAAATACCACCATCACCATATCC
GGTACCACCCTGCATGGCTGCACCGTAGCTGCATCATGGTCTGCAGTTTC
AGCACCAGCGTCATCGCCATCACTGCTGTGTTTGTCTACTTCCCGTAACT
TGTCACAAAAATCATATCTTTCTACAGTGATTGCAGCCTCAACTTATATG
AAGTTTTTTTTTTCTCTTTCCAGTTTGAGTATTCTAAATCTCTAGTATGA
GGATTGATCATTGTCTTTAATGAAGATAATGATAAGCGTGCACATTATTG
GTAGTCTTGTTTCATTTTTTGGCAGAATTTGGCTTCAAAGGATCAGTCTA
AATTGTCTGAACCAGTCAAAGAGCTGGATATCTTGTTGACTCAGGTACTT
ACACAGTATCTTCATAAATTTCTATTTTACTGAAGTCAAGATTTCTTACA
TTTATATTACTGTGAAGATTGCAGCTGGTGTACCTTTGGATATAATGCCA
GGACCTAATGACCCGGCAAATTTTGCCTTGCCGCAGCAGGTTGATTTACG
TCATTCCAATGTAGCATATAGTTAGTGTACCTATTGTGTAGGAGTAGATT
GTTTCTAATATCCCTTGTCTTTCAGCCTTTGCACAGATGTCTTTTTCCAG
GTTCATCAGCTTATAACACTTTCAAATCCTGTACAAATCCGCACTCTTTC
GAGCTTGACAATACTAGGTAAGATATATTATCTTAGTTCTAGTACTTTCT
GGTTTCAACATAGCACCACGACTCTTTCAAGGAAGAAAATATGGCACTAT
GATGTTTCCTCTTCGTCTGCAGATTTCTTGGAACATCGGGGCAGAATATT
GATGATCTCGAGAAATATTCCGAGGCAAAAGATAAGCTTGAATTTATGGA
GCGCACATTGAGGTGGAGACATATTGCACCAACTGCCCCGAATACCCTTG
GTAGATAATAATATCCTTCCATAAGTATTACTATAATTTCCTTTGCAGTT
TGTTCTGGAATCCATTGCAGTTGTTGAGTTGTAAATTTATATGGCGAAAA
AGTGCTTAATTGGACACAACCTAATAGTATAAGGAGATAGTCAGAATTTT
CTTCTACTCAAGTAAAGATATTTGATCAGAAAAAAGTAAAATGGAAAGTA
AAAGATAAAAAATTTGGATGGTTATTTGATTCTCATGGAGTTCTGCATGA
CTTGCTAGCTTAACTCATCTTAATATCCTCTGTTTTTTCATTTTTCACAG
GGTGTTATCCCTTCACTGATAGGGATCCTTTCTTTGTTGAGAGATGTCCC
CACGTTTACTTTGTTGGTAATCAGGATAGATATGAGACTCGCATAATAAA
GGGTACTTCTCCTTAAGTTCTTTTCAGCTGGAGTACTGTTTTCCTAACCT
TATAGTGACATGTTATTGGTGCCCTTTGTTGTAGGATCAGAGGGGCAAGT
TGTAAGACTTATATGCATTCCTCGATTTGGTGAGACAGGGATTGCTGTTG
TGGTAAGCTCTTGTTTGCAAATAAATTGAAAATCAATTATTCACTAGAGA
AACTCATGGTTCAGATACATGATTTTGCGTGTGCCCGTGTCTCCTTGGAT
ACAGCCCAACTTGAAGCTTAAGCACCATGTCCAATGCCAGTTGAGATCAT
TCTGCCTTCGAAAATTAATACGCATTTTAGTACAAAATTATGCCAAAAAA
GAATACAGCTCCATTAGGTTGACCTTTTGCAAGGGCAACTTTATATTAGC
TCCTTGTGGTTTGGTCCATGTGTGCATAACCCCCTTCTTAGAAGTTCCTG
TGCTTCTTATTTTAGGTCATTTCAGAAGGTGGAAAGGTAATTTGATCCTT
TTCGGGTATAATTAATTACTGGTCCATGGAAATATGAGTTTCCTGTATGT
TTATGAAAGATGAGTGGGACTAGGAAAGAGATGGTTTGCTTCCCAAGCTT
GGTTGACACCATGGTCACCGAGCTGGGAAGGGACTTCAAGTTTGTGTCTT
GAAGATGCCATCTACTCGGGAACATATTGGGTTGGATGGGCGCGTAATCT
TATTATCAACTACAGCCAAACGAAGCTATCAAACAAAACAAGGAAGAATG
GAAATTGAAAAAGAACATAAAAAGTCAATGGTATTGTCAAATGACTTCCT
TTTATTCGTTCATGGTTTTCTCTCCCCATTGTAAAACCATTCAATCTCAG
GCTATTTTTGGCTCATTTGTTTTTTCAGTTCTTTCAAATTTAAGGAATTC
TTGTTCTGTTTATACTCCATCTTTTGACATGGAATGAGTGTTATATTGGT
GGATCAAAAAAAAAGAAAAAAGAAAGAAAGTGTTGTATTGGTTATTTATT
GGTAACCTATATATTTATATACTACCACGGAAAATAATTGGGTGGCTTTA
GTAATTCTACGTTTGGACCACTAACTTTCTTGGAATACAAGATACACGGC
AGTAGTTTGGCAGTATCTGTCCTATCGTCTTCTTTAGAAAGCAATTTCTT
GTTCTTTATGGTCTTGAATCAGTAAAAACAGCCATCTTGGTCATAGAATT
CCCGTCTTCCTATCCAGCANNNNNNNNNNNNNNNNNNNNAGAGATTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACA
CACACACACAAGCACGCACACACACACTCTTTGTGATTGGAATGCCAAGA
ACTTTGTGTGTGTGAGAGAGAAATCACAGAGTGTGTGAGAAATCACCAAG
AGTTGGCAAGAAGCATTGGATTGTTACATAATGCATATGCATGCCTAAAC
TCAGTCCCTGGTTATTGTGCAGTTAAACATGAGAAATCTTGAATGCCACG
CTCTCAGTTTTGGGACTGAATTCAGCTCCTAGGTATGTTGATCTAAAGCT
ACATTCCCTACATTCTATTTCCATAGAGTTTGTCTTGTGCGTAATTGTTA
ACATTTTATTCTCATTTAATTGGGGATTACTGTGTCTGTGGAAAATACCA
TTTCAGCTTTTAAGCCAAAAATTCTCAGTATACATATGGTAGTTCAGTTC
AGTTGTTTTAAGTCTTGGTTACTTCTATTTTCTGGCGGGGGAAGGAGAAA
GAAATCACAAATGGGAGGTTTGAAGGTCTCTCTGAGATCTACTTTAGTCA
TCTTGAAAGCATGTTTGATTGTTTTCAGAATAACCTTACAACTATAATAT
ATGAAGAATAGTGATGGACTATTTCTGAGCTTTTCGTCTATCTAGAATCC
ACAATTACAACACATTGAGTTCTTTTTATCCCTTGTTTCCAATATTACAA
CAGACAAGTAATTCTTTAGTCCTGGTAAGCTTCCATAGCCTTTTTTTTTT
CCTCTTTGATTATTACCAGTCTATGGTCATAGACTCATATAGGCATTAAA
TTGAGAGAATGCAGTTCTTTGTGGAAGGTATGAGTTTGGTTGATGAAACC
GGGGTGGACTAATTCTTGAAAACTAGTCTTGGTTCTAAATTTTAAGAATT
TCATTGTGAATACGTCGTATAAGGATGTCTTCACTTAGTAAAAAAGGCGT
ACCCAGCTCCTGCATATGCGGGGTCTTGAGAAGGGTTGATGTACGCAGCT
GTACTTCTGCGAGGAGAGAGGCTATTTAGAGAATTGAACTTGTGACGTAC
ACCCAGAATGGGTCAGCTTCACCGCTGCGCCAGGTCCGCCTTCATGTCTT
CACTTAGAGTAAATTGAAAATTGTAAGGCATTTGGAAGGAATCATTATCC
TCTCTTGTTACTATCATTTTTGTTATTCCTGATGTGGCGGAAATGTGGCG
CAAAATGAGTCCGCCACAATCCCATATGATGCTCCAAGCAAAAAATTAAG
TTGAGAATCCGATATCTATTTGAACCAACAAACAACTTACACAATCTGAA
GAGCGATGGGTGGTCTTAAAAAAAAACATGATTCAACCAAGCCTTTACCG
TATTCACGTCATCCGAGTATTTTGAACGGGTGATTTATGCATTGGGGTCT
AAATGAGCTGCTTGGGTAGTTAAATGGAATTGCATTGGATCCCATTTTGC
GTCACATAGTATCATCCCAATGACGAAGATCATTTCTCATTTGGAAGTGA
CCATTTGGCCCCTTGTGGTGTCCTTGATTAGCTATCAAAATGAGGAAGGG
GAGTTTTAATTTGTATGTTTAAAAGAATGCAACTCATAAAATACATGCGA
ATAGATCAAGATGAGTTTTAGTCTGGTGTCTTATTTTGATATTCTTCTGT
AAGGCAAAATCTTCAGTACCGCATTAGCATTTATTCTTCTGTTTTAATTT
CTAATTGCGTAGGAGAATTTTTCGCATGTCTACTTCAAAGCTGCAGGAGT
TGCAACAGTTGTTTCCAGTTTCTGCCGCGGCTGTGAAGAAGATTCAATTG
TGAAAGCTGAAAAGATGGAAACTGTCAAAAACTCAAGCTGGAGAAACTGC
TGTTCTCTTTTTGCTGCTTTTTCTTTGTTTGATTGTAGGTTTGGTTTCCT
AATTGAAGTGGTTTTCCATGTATGAGTGAATGTGTAATTCAATTAACATA
TCTTTGTTAGTCAATTTGTATCAGTTCTGATATAAGACGTTTGTTTACTT
TGATAAAATTGTCGTATGGTAAACATGAACGCATTGGGATGTGAAGATCC
TTTGATAATATGATAGATAATGACTGATAGTATTCT back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0006260 | DNA replication |
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
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