Expression: Phenolic compound and anthocyanin biosynthesis

Overview
Analysis NameExpression: Phenolic compound and anthocyanin biosynthesis
MethodIllumina NovaSeq (HISAT2)
SourcePRJNA998787
Date performed2024-03-12

This data is from the following manuscript: Hirabayashi K, Debnath SC, Owens GL. Unveiling the evolutionary history of lingonberry (Vaccinium vitis-idaea L.) through genome sequencing and assembly of European and North American subspecies. G3 (Bethesda, Md.). 2023 Dec 24.  NCBI BioProject PRJNA998787.  Expression values are in FPKM. 

The raw data for the Sunna cultivar is from NCBI Bioproject PRJNA392725 and the manuscript: Tian Y, Ma Z, Ma H, Gu Y, Li Y, Sun H. Comparative transcriptome analysis of lingonberry (Vaccinium vitis-idaea) provides insights into genes associated with flavonoids metabolism during fruit development. Biotechnology & Biotechnological Equipment. 2020 Jan 1;34(1):1252-64. Expression values are in FPKM. 

 

Sample Tissue
RedCandy_leaf_FPKM Leaf
RedCandy_rhizome_FPKM Rootstalk
RedCandy_flower_FPKM Flower
RedCandy_berry_FPKM Fruit
Sunna_greenberry_FPKM Green fruit
Sunna_whiteberry_FPKM White fruit
Sunna_redberry_FPKM Red fruit
Properties
Additional information about this analysis:
Property NameValue
Data source filepublic://expression/65f0a777cac67_1624-expression.txt