Vaccinium corymbosum unigene v1

Unigene Details
Analysis Name Vaccinium corymbosum unigene v1
Unigene Name Vaccinium corymbosum unigene v1
Software cap3 (1.0)
Source Vaccinium corymbosum unigene v1
Date constructed 2011-01-18
Materials & Methods

An a ssembly of 5,267 EST sequences downloaded from NCBI dbEST using the cap3 assembly software (parameter: -p 90). 5,104 ESTs were used in the analysis after trimming using crossmatch against UniVec_Core (parameter: -minmatch 10 -penalty -2 -minscore 20 -screen) and filtering out RNA contamination using tblastx (parameter: -e 1e-6). Poly-A tail was also trimmed after RNA filtering. The assembly results in 748 contigs and 2,955 singlets.

 

Stats Number of Sequences Min Length Max Length Average Length
Unigene 3703 100 bp 2112 bp 585 bp
Contig 748 106 bp 2112 bp 755 bp
Singlet 2955 100 bp 1092 bp 542 bp

 

 

Organisms Vaccinium corymbosum
Homology
Homology for Vaccinium corymbosum unigene v1
Number (%) of Unigenes with a Match in Swiss-Prot Database
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1,898 (51%)
Number (%) of Unigenes with a Match in TrEMBL Database
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2,664 (72%)
Number (%) of Unigenes with a Match in TAIR (Arabidoposis) Database
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2,490 (67%)
Number (%) of Unigenes with a Match in Poplar
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2,591 (70%)
Number (%) of Unigenes with a Match in Peach
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2,574 (70%)
Number (%) of Unigenes with a Match in Grape
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2,579 (70%)

 

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