vm01649, vm01649 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	vm01649
Genbank ID	N/A
Type	SSR
Species	Vaccinium macrocarpon
Repeat Motif	(AG)11
Primer 1	vm01649.forward primer: ACAGTATACACAGCAAAACGTG
Primer 2	vm01649.reverse primer: CTCCTATTATTTATACGGGTGC
Product Length	167
Max Length	172
Publication	[view all]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold00772	supercontig	scaffold00772:14886..15018 .
scaffold14_H1	supercontig	scaffold14_H1:5007..5137 .
Vmac_chr06	supercontig	Vmac_chr06:25977949..25978094 .
chr6	supercontig	chr6:13376408..13376551 .
Chr01	supercontig	Chr01:14914255..14914385 .
Chr01_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr01_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:16481796..16481926 .
Chr01_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr01_Vaccinium_vitis-idaea_ssp_minus:16288169..16288299 .

Publications


Year	Publication
2012	Zhu H, Senalik D, McCown BH, Zeldin EL, Speers J, Hyman J, Bassil N, Hummer K, Simon PW, Zalapa JE. Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2012 Jan; 124(1):87-96.