CHI-2, CHI-2 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	CHI-2
Genbank ID	N/A
Type	SSR
Species	Vaccinium corymbosum
Primer 1	CHI-2.Forward Primer: ACGTGGTCCAATCTAACCTCAC
Primer 2	CHI-2.Reverse Primer: TAGTAAGTGGAGGCCGGTAAAA
Publication	[view all]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Vcev1_p0.Chr11	supercontig	Vcev1_p0.Chr11:28979215..28979502 .
scaffold03186	supercontig	scaffold03186:6716..7003 .
chr11_H1	supercontig	chr11_H1:24679934..24680213 .
Chr11	supercontig	Chr11:15497571..15497866 .
Chr11_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr11_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:17090824..17091115 .
Chr11_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr11_Vaccinium_vitis-idaea_ssp_minus:16765762..16766052 .

Publications


Year	Publication
2016	McCallum S, Graham J, Jorgensen L, Rowland L, Bassil N, Hancock J, Wheeler E, Vining K, Poland J, Olmstead J, Buck E, Wiedow C, Jaclson E, Allan B, Hackett C. Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing. Molecular Breeding. 2016; 36(41):1-24.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Blueberry-Draper	LG10	N/A	58	CHI-2a	View
2	Blueberry-Jewel	LG10b	N/A	0	CHI-2c	View