Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence

Genome Overview
Analysis NameVaccinium caesariense clone W85-20 P0 v2.0 genome sequence
MethodPacBio, HiRise, Hi-C (assembly with FALCON, Pilon)
SourceV. caesariense clone W85-20
Date performed2022-02-15

This is the primary haplotype assembly

Reference:  Mengist M.F., H. Bostan, D. De Paola, S.J. Teresi, A. Platts, G. Cremona, X. Qi, T. Mackey, N.V. Bassil, H. Ashrafi, L. Giongo, R. Jibran, D. Chagné, L. Bianco, C. Finn, M.A. Lila, L.J. Rowland, M. Iovene, P.P. Edger and M. Iorizzo. Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberries.  Submitted.

The authors have kindly provided this data pre-publication according to the Ft. Lauderdale Accord. By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a whole genome or chromosome scale prior to publication by the authors and/or collaborators of a comprehensive genome analysis such as identification of complete (whole genome) sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and whole-genome- or chromosome- scale comparisons with other species.  Bulk download of the assembly files will become available once the data is published.  If you would like access to the data prior to that, please contact the authors directly.

Genome Assembly Summary:

Total size 702,844,458 bp
Number of scaffolds 273
N50 56,354,576 bp
Assembly BUSCO score (embryophyta_odb10) 95.3%
Annotation BUSCO score (embryophyta_odb10) 97.8%
Properties
Additional information about this analysis:
Property NameValue
JBrowse URLhttps://www.vaccinium.org/jbrowse/index.html?data=data%2FBlueberry%2FV_caesariense_W85-20_P0_v2&loc=
Analysis Typewhole_genome
Downloads

All the files below are also available on the GDV Data Repository.

V. caesariense clone W85-20 genome primary assembly, v2.0 assembly files:

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.