total fruit yield, qFYLD.CNJ02-01.LG4 (QTL) Vaccinium macrocarpon

QTL Overview


QTL Label	qFYLD.CNJ02-01.LG4
Published Symbol	TY
Trait Name	total fruit yield
Trait Alias	total yield.
Trait Study	Cranberry-Yield_Traits-Schlautman-2015
Population	CNJ02-1
Female Parent	Mullica Queen
Male Parent	Crimson Queen
Colocalizing Marker	SCF11084
Neighboring Marker	N/A
Environment	N/A
LOD	6.65
Additivity Dominance Ratio	N/A
R2	0.12
Comments	N/A

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3_H1	supercontig	chr3_H1:41878512..41878811 .
chr4	supercontig	chr4:4044973..4045260 .
Vmac_chr04	supercontig	Vmac_chr04:32498400..32498687 .

Publications


Year	Publication
2015	Schlautman B, Covarrubias-Pazaran G,. Diaz-Garcia LA,Johnson-Cicalese J, Iorrizo M, Rodriguez-Bonilla L,Bougie T, Bougie T, Wiesman E, Steffan S, Polashock J, Vorsa N, Zalapa J. Development of a high-density cranberry SSR linkage map for comparative genetic analysis and trait detection. Molecular Breeding. 2015; 35(177).

Map Positions


#	Map Name	Linkage Group	Bin	Chromosome	Peak	Span Start	Span Stop	MapViewer
1	Cranberry-CNJ02-1-2007	LG4	N/A	N/A	88	-	-	View

Sequences

The following sequences are available for this feature:

QTL from alignment at chr3_H1:41878512..41878811
QTL from alignment at chr4:4044973..4045260
QTL from alignment at Vmac_chr04:32498400..32498687

QTL from alignment at chr3_H1:41878512..41878811

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qFYLD.CNJ02-01.LG4 ID=qFYLD.CNJ02-01.LG4; Name=total fruit yield; organism=Vaccinium macrocarpon; type=QTL; length=300bp; location=Sequence derived from: chr3_H1:41878512..41878811 (Vaccinium darrowii
GTTGGCTGAGGTAGCTGACAGCGTGGGGCACTCACTCTCTCTCTCTCTCT
CTCTCTCTCTCCCATCCCTCTTTTGTTGGAAATCCGGTCTTCAAACTATG
TTGATGGCGTCGTCTCTACTGAAAAAATCTAGATGCATGTTGTAACAACG
CTTTCCTAAAAACATTATTTGCCCCTATCAAATGGTGTGCACCGGATTAA
CAGCAAATGCCCCTTCAAGATACAACGAGACCAAATTCTACGTTCTTTCT
AATTGCGTTTGCACAAACAAAGACAGATATAACTTGTGAGCCCTTTTAGG

QTL from alignment at chr4:4044973..4045260

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qFYLD.CNJ02-01.LG4 ID=qFYLD.CNJ02-01.LG4; Name=total fruit yield; organism=Vaccinium macrocarpon; type=QTL; length=288bp; location=Sequence derived from: chr4:4044973..4045260 (Vaccinium macrocarpon
GTTGGCTGAGGTAGCTGATAGCGTGGGGCACTCACTCTCTCTCTCTCTCT
CTCATCCCTCTTTTATTGGAAATCCGGTCTTCAAATATGTTGATGGCGTC
ATCTCTACCGAAAAAATCTAGATGCATGTTGTAACAACGCTTTCCTAAAA
ATATTATTTGCCCCTATCAAATGGTGTGCACCGGATTAACAGCAAATGCC
CCTTCAAGATATAACAAACCAAATTCTACATTCTTTCTAACTGCGTTTTC
ACAAACAAAGACAGATATAACTTGTGAGCCCTTTTAGG

QTL from alignment at Vmac_chr04:32498400..32498687

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qFYLD.CNJ02-01.LG4 ID=qFYLD.CNJ02-01.LG4; Name=total fruit yield; organism=Vaccinium macrocarpon; type=QTL; length=288bp; location=Sequence derived from: Vmac_chr04:32498400..32498687 (Vaccinium macrocarpon
GTTGGCTGAGGTAGCTGATAGCGTGGGGCACTCACTCTCTCTCTCTCTCT
CTCATCCCTCTTTTATTGGAAATCCGGTCTTCAAATATGTTGATGGCGTC
ATCTCTACCGAAAAAATCTAGATGCATGTTGTAACAACGCTTTCCTAAAA
ATATTATTTGCCCCTATCAAATGGTGTGCACCGGATTAACAGCAAATGCC
CCTTCAAGATATAACAAACCAAATTCTACATTCTTTCTAACTGCGTTTTC
ACAAACAAAGACAGATATAACTTGTGAGCCCTTTTAGG