Total anthocyanin content, qTAC.CNJ02-1.LG01.3 (QTL) Vaccinium macrocarpon

QTL Overview
QTL LabelqTAC.CNJ02-1.LG01.3
Published Symboltacy_oct-1-cnj02
Trait NameTotal anthocyanin content
Trait AliasN/A
Trait StudyCranberry-Fruit_anthocyanin-2018
PopulationN/A
Female ParentN/A
Male ParentN/A
Colocalizing Marker1trimcontig440230
Neighboring MarkerN/A
EnvironmentN/A
LOD2.22
Additivity Dominance RatioN/A
R20.02
CommentsN/A
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1supercontigchr1:16885726..16885936 .
chr2_H1supercontigchr2_H1:36700873..36701090 .
scaffold00215supercontigscaffold00215:127524..127744 .
Vmac_chr01supercontigVmac_chr01:33087002..33087209 .
Map Positions
#Map NameLinkage GroupBinChromosomePeakSpan StartSpan StopMapViewer
1Cranberry-Composite_map-F1LG01N/AN/A62--View
Sequences
The following sequences are available for this feature:

QTL from alignment at chr1:16885726..16885936

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
>qTAC.CNJ02-1.LG01.3 ID=qTAC.CNJ02-1.LG01.3; Name=Total anthocyanin content; organism=Vaccinium macrocarpon; type=QTL; length=211bp; location=Sequence derived from: chr1:16885726..16885936 (Vaccinium macrocarpon
ATTAGCAGTAGTCCAATCGGTTTACAACTCCCACATATAAATAGATCAAA TTCTCCAACCCTATTTAGGATTTCCAAATCACCATCTCTTATATATACAA AGTTACAAACAGATAGAAAATATGTTCATAAATTCTTCTTCTTCTTCTTC TTCTTCTTCTTCTAGATCATGGAATTCAACCGCAGCCGCATAACCACCAC CTACAAAGTGT
back to top

QTL from alignment at chr2_H1:36700873..36701090

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
>qTAC.CNJ02-1.LG01.3 ID=qTAC.CNJ02-1.LG01.3; Name=Total anthocyanin content; organism=Vaccinium macrocarpon; type=QTL; length=218bp; location=Sequence derived from: chr2_H1:36700873..36701090 (Vaccinium darrowii
ACACTTTGTAGGTGGTGGTTCTGCGGCTGCGGTTGAATTCCATGATCTAG AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTGATGAACATATTT TCTGTCTGTTTGTAACTTTGTATATATAAGAGATGGTGATTTGGAAATCC GAAATAGGGTTGGAGAACTTTTATCTGTTTATATGTGGGAGGTGTAAACC GATTGGACTACTGCTAAT
back to top

QTL from alignment at scaffold00215:127524..127744

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
>qTAC.CNJ02-1.LG01.3 ID=qTAC.CNJ02-1.LG01.3; Name=Total anthocyanin content; organism=Vaccinium macrocarpon; type=QTL; length=221bp; location=Sequence derived from: scaffold00215:127524..127744 (Vaccinium corymbosum
ACACTTTGTAGGTGGTGGTTCTGCGGCTGCGGTTGAATTCCATGAtcTAG AAGAAGAAGAAGAaGAAgAAGAAGAAGAaGAaGAAGAATTTATGAACATA TTTtCTATCTGTTTGTAACTTTGTATATATAaGaGatGgTGATTTGGAAA tCcGAAATAGGGTTGGAGAATTTTGATCTGTTTATATgTGGGAGGTGTAA ACCGATTGGACTACTGCTAAT
back to top

QTL from alignment at Vmac_chr01:33087002..33087209

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
>qTAC.CNJ02-1.LG01.3 ID=qTAC.CNJ02-1.LG01.3; Name=Total anthocyanin content; organism=Vaccinium macrocarpon; type=QTL; length=208bp; location=Sequence derived from: Vmac_chr01:33087002..33087209 (Vaccinium macrocarpon
ACACTTTGTAGGTGGTGGTTATGCGGCTGCGGTTGAATTCCATGATCTAG AAGAAGAAGAAGAAGAAGAAGAAGAATTTATGAACATATTTTCTATCTGT TTGTAACTTTGTATATATAAGAGATGGTGATTTGGAAATCCTAAATAGGG TTGGAGAATTTGATCTATTTATATGTGGGAGTTGTAAACCGATTGGACTA CTGCTAAT
back to top