Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing

Publication Overview
TitleConstruction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing
AuthorsMcCallum S, Graham J, Jorgensen L, Rowland L, Bassil N, Hancock J, Wheeler E, Vining K, Poland J, Olmstead J, Buck E, Wiedow C, Jaclson E, Allan B, Hackett C
TypeJournal Article
Journal NameMolecular Breeding
Volume36
Issue41
Year2016
Page(s)1-24
CitationMcCallum S, Graham J, Jorgensen L, Rowland L, Bassil N, Hancock J, Wheeler E, Vining K, Poland J, Olmstead J, Buck E, Wiedow C, Jaclson E, Allan B, Hackett C. Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing. Molecular Breeding. 2016; 36(41):1-24.

Abstract

The construction of the first genetic map in autotetraploid blueberry has been made possible by the development of new SNP markers developed using genotyping by sequencing in a mapping population created from a cross between two key highbush blueberry cultivars, Draper × Jewel (Vaccinium corymbosum). The novel SNP markers were supplemented with existing SSR markers to enable the alignment of parental maps. In total, 1794 single nucleotide polymorphic (SNP) markers and 233 simple sequence repeat (SSR) markers exhibited segregation patterns consistent with a random chromosomal segregation model for meiosis in an autotetraploid. Of these, 700 SNPs and 85 SSRs were utilized for construction of the ‘Draper’ genetic map, and 450 SNPs and 86 SSRs for the ‘Jewel’ map. The ‘Draper’ map comprises 12 linkage groups (LG), associated with the haploid chromosome number for blueberry, and totals 1621 cM while the ‘Jewel’ map comprises 20 linkage groups totalling 1610 cM. Tentative alignments of the two parental maps have been made on the basis of shared SSR alleles and linkages to double-simplex markers segregating in both parents. Tentative alignments of the two parental maps have been made on the basis of shared SSR alleles and linkages to double-simplex markers segregating in both parents.
Stocks
This publication contains information about 1 stocks:
Stock NameUniquenameType
Draper_X_Jewel-F1Draper_X_Jewel-F1population
Features
This publication contains information about 1,259 features:
Feature NameUniquenameType
AOMT-3AOMT-3genetic_marker
AP1-2AP1-2genetic_marker
ATDGK1-3ATDGK1-3genetic_marker
CA483FCA483Fgenetic_marker
CA642FCA642Fgenetic_marker
CA787FCA787Fgenetic_marker
CA794FCA794Fgenetic_marker
CA855FCA855Fgenetic_marker
CA94FCA94Fgenetic_marker
CDF-5CDF-5genetic_marker
CDF-7CDF-7genetic_marker
CER6-2CER6-2genetic_marker
CHI-2CHI-2genetic_marker
COP1-1COP1-1genetic_marker
FLS-2FLS-2genetic_marker
FLS-3FLS-3genetic_marker
GVC-C278GVC-C278genetic_marker
GVC-C600GVC-C600genetic_marker
GVC-C652GVC-C652genetic_marker
GVC-C668GVC-C668genetic_marker
GVC-C78GVC-C78genetic_marker
GVC-NA172GVC-NA172genetic_marker
GVC-NA247GVC-NA247genetic_marker
GVC-NA398bGVC-NA398bgenetic_marker
GVC-NA41GVC-NA41genetic_marker

Pages

Featuremaps
This publication contains information about 2 maps:
Map Name
Blueberry-Draper
Blueberry-Jewel
Properties
Additional details for this publication include:
Property NameValue
URLhttps://link.springer.com/article/10.1007/s11032-016-0443-5