CA1632, CA1632 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	CA1632
Genbank ID	N/A
Type	EST-SSR
Species	Vaccinium corymbosum
Repeat Motif	(TTCCA)3
Primer 1	CA1632.forward primer: CTCCCTCTCCCCTTGAAAAC
Primer 2	CA1632.reverse primer: ATGATCGAAATGCGAAGGAC
Max Length	207
Publication	[view all]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Vcev1_p0.Chr10	supercontig	Vcev1_p0.Chr10:26334068..26334255 .
scaffold02211	supercontig	scaffold02211:1226..1414 .
Vmac_chr08	supercontig	Vmac_chr08:17769355..17769547 .
chr8	supercontig	chr8:19942666..19942858 .
Chr10	supercontig	Chr10:17309818..17310005 .
Chr10_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr10_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:19838162..19838349 .
Chr10_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr10_Vaccinium_vitis-idaea_ssp_minus:18187579..18187766 .

Publications


Year	Publication
2014	Bian Y, Ballington J, Raja A, Brouwer C, Reid R, Burke M, Wang X, Rowland LJ, Bassil N, Brown A. Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure. Molecular breeding. 2014; 34(2):675-689.
2005	Boches P, Bassil N, Rowland L. Microsatellite markers for Vaccinium from EST and genomic libraries. Molecular ecology notes. 2005; 5(3):657-660.