1trimcontig238080, 1trimcontig238080 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	1trimcontig238080
Genbank ID	KP279231
Type	EST-SSR
Species	Vaccinium macrocarpon
Repeat Motif	(AAG)13
Primer 1	1trimcontig238080.forward primer: AGGGGTAATCTTCACACACTTA
Primer 2	1trimcontig238080.reverse primer: ACAGGCTCTTCTAATCGTTTC
Max Length	423
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	KP279231

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Vmac_chr06	supercontig	Vmac_chr06:24841436..24841825 .

Publications


Year	Publication
2015	Schlautman B, Fajardo D, Bougie T, Wiesman E, Polashock J, Vorsa N, Steffan S, Zalapa J. Development and validation of 697 novel polymorphic genomic and EST-SSR markers in the American cranberry (Vaccinium macrocarpon Ait.). Molecules (Basel, Switzerland). 2015; 20(2):2001-13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-CNJ02-1-2007	LG6	N/A	46.57	1trimcontig238080	View
2	Cranberry-CNJ02-1-2017	LG06	N/A	42	1trimcontig238080	View
3	Cranberry-Crimson_Queen-2017	LG06	N/A	36.8	1trimcontig238080	View
4	Cranberry-Mullica_Queen-2017	LG06	N/A	47.3	1trimcontig238080	View
5	Cranberry-Crimson_Queen-2007	LG6	N/A	41.3	1tc238080	View
6	Cranberry-Mullica_Queen-2007	LG6	N/A	56.8	1tc238080	View
7	Cranberry-Composite_map-F1	LG06	N/A	51.28	1trimcontig238080	View
8	Cranberry-Crimson_Queen-F1	LG06	N/A	46.51	1trimcontig238080	View
9	Cranberry-Mullica_Queen_1-F1	LG06	N/A	57.3	1trimcontig238080	View