1trimcontig440230, 1trimcontig440230 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	1trimcontig440230
Genbank ID	KP279249
Type	EST-SSR
Species	Vaccinium macrocarpon
Repeat Motif	(AGA)12
Primer 1	1trimcontig440230.forward primer: ACACTTTGTAGGTGGTGGTTAT
Primer 2	1trimcontig440230.reverse primer: ATTAGCAGTAGTCCAATCGGT
Max Length	243
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	KP279249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold00215	supercontig	scaffold00215:127524..127744 .
chr2_H1	supercontig	chr2_H1:36700873..36701090 .
Vmac_chr01	supercontig	Vmac_chr01:33087002..33087209 .
chr1	supercontig	chr1:16885726..16885936 .

Publications


Year	Publication
2015	Schlautman B, Fajardo D, Bougie T, Wiesman E, Polashock J, Vorsa N, Steffan S, Zalapa J. Development and validation of 697 novel polymorphic genomic and EST-SSR markers in the American cranberry (Vaccinium macrocarpon Ait.). Molecules (Basel, Switzerland). 2015; 20(2):2001-13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-CNJ02-1-2007	LG1	N/A	50.96	1trimcontig440230	View
2	Blueberry-F1#10_x_W85-23-F1-2017	LG01	N/A	49.6	1trimcontig440230	View
3	Blueberry-F1#10-2017	LG01	N/A	59.9	1trimcontig440230	View
4	Blueberry-W85-23-2017	LG01	N/A	46.7	1trimcontig440230	View
5	Cranberry-CNJ02-1-2017	LG01	N/A	48.8	1trimcontig440230	View
6	Cranberry-Crimson_Queen-2017	LG01	N/A	43.9	1trimcontig440230	View
7	Cranberry-Mullica_Queen-2017	LG01	N/A	53.4	1trimcontig440230	View
8	Cranberry-Crimson_Queen-2007	LG1	N/A	46.1	1tc440230	View
9	Cranberry-Mullica_Queen-2007	LG1	N/A	54.4	1tc440230	View
10	Cranberry-Composite_map-F1	LG01	N/A	62.75	1trimcontig440230	View
11	Cranberry-Crimson_Queen-F1	LG01	N/A	35.75	1trimcontig440230	View
12	Cranberry-Mullica_Queen_1-F1	LG01	N/A	47.08	1trimcontig440230	View