1trimcontig450309, 1trimcontig450309 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	1trimcontig450309
Genbank ID	KP279253
Type	EST-SSR
Species	Vaccinium macrocarpon
Repeat Motif	(TCC)11
Primer 1	1trimcontig450309.forward primer: AAAATCAGAGGGAAGAAAGC
Primer 2	1trimcontig450309.reverse primer: TATTAGCCAGTCCTCCTTTGTA
Max Length	147
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	KP279253

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold01703	supercontig	scaffold01703:38092..38203 .
Vmac_chr07	supercontig	Vmac_chr07:36075519..36075633 .
chr7	supercontig	chr7:36107327..36107447 .
Chr12_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr12_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:40629585..40629696 .
Chr12_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr12_Vaccinium_vitis-idaea_ssp_minus:40168379..40168484 .

Publications


Year	Publication
2015	Schlautman B, Fajardo D, Bougie T, Wiesman E, Polashock J, Vorsa N, Steffan S, Zalapa J. Development and validation of 697 novel polymorphic genomic and EST-SSR markers in the American cranberry (Vaccinium macrocarpon Ait.). Molecules (Basel, Switzerland). 2015; 20(2):2001-13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-CNJ02-1-2007	LG7	N/A	1.11	1trimcontig450309	View
2	Blueberry-F1#10_x_W85-23-F1-2017	LG07	N/A	0	1trimcontig450309	View
3	Blueberry-F1#10-2017	LG07	N/A	0	1trimcontig450309	View
4	Cranberry-CNJ02-1-2017	LG07	N/A	0	1trimcontig450309	View
5	Cranberry-Mullica_Queen-2017	LG07	N/A	0	1trimcontig450309	View
6	Cranberry-Mullica_Queen-2007	LG7	N/A	1.3	1tc450309	View
7	Cranberry-Composite_map-F1	LG07	N/A	90.7	1trimcontig450309	View
8	Cranberry-Mullica_Queen_1-F1	LG07	N/A	106.44	1trimcontig450309	View