1trimcontig344502, 1trimcontig344502 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	1trimcontig344502
Genbank ID	KP279241
Type	EST-SSR
Species	Vaccinium macrocarpon
Repeat Motif	(AG)16
Primer 1	1trimcontig344502.forward primer: TGGAAATGGAAAAGTCTCTG
Primer 2	1trimcontig344502.reverse primer: CACCGTCTACAGTTTAAGAACA
Max Length	165
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	KP279241

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Vmac_chr06	supercontig	Vmac_chr06:14943541..14943680 .
chr6	supercontig	chr6:20845491..20845614 .

Publications


Year	Publication
2015	Schlautman B, Fajardo D, Bougie T, Wiesman E, Polashock J, Vorsa N, Steffan S, Zalapa J. Development and validation of 697 novel polymorphic genomic and EST-SSR markers in the American cranberry (Vaccinium macrocarpon Ait.). Molecules (Basel, Switzerland). 2015; 20(2):2001-13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-CNJ02-1-2007	LG6	N/A	56.8	1trimcontig344502	View
2	Cranberry-CNJ02-1-2017	LG06	N/A	48.2	1trimcontig344502	View
3	Cranberry-Crimson_Queen-2017	LG06	N/A	44.1	1trimcontig344502	View
4	Cranberry-Mullica_Queen-2017	LG06	N/A	53.3	1trimcontig344502	View
5	Cranberry-Crimson_Queen-2007	LG6	N/A	49.6	1tc344502	View
6	Cranberry-Mullica_Queen-2007	LG6	N/A	68.8	1tc344502	View
7	Cranberry-Composite_map-F1	LG06	N/A	42.97	1trimcontig344502	View
8	Cranberry-Crimson_Queen-F1	LG06	N/A	36.36	1trimcontig344502	View
9	Cranberry-Mullica_Queen_1-F1	LG06	N/A	48.37	1trimcontig344502	View
10	Cranberry-Mullica_Queen_2-F1	LG06	N/A	46.36	1trimcontig344502	View
11	Cranberry-Stevens-F1	LG06	N/A	44.86	1trimcontig344502	View