SCF43220, SCF43220 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	SCF43220
Genbank ID	KP278712
Type	SSR
Species	Vaccinium macrocarpon
Repeat Motif	(TC)14
Primer 1	SCF43220.forward primer: CTTGTCGAGCATCCTATATTTC
Primer 2	SCF43220.reverse primer: AAAAGTCATGGGAAGGTGTT
Max Length	159
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	KP278712

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Vmac_chr01	supercontig	Vmac_chr01:17930530..17930660 .
chr1	supercontig	chr1:31085832..31085966 .

Publications


Year	Publication
2015	Schlautman B, Fajardo D, Bougie T, Wiesman E, Polashock J, Vorsa N, Steffan S, Zalapa J. Development and validation of 697 novel polymorphic genomic and EST-SSR markers in the American cranberry (Vaccinium macrocarpon Ait.). Molecules (Basel, Switzerland). 2015; 20(2):2001-13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-[BGx(BLxNL)]95_x_ GH1x35-F1	LG1	N/A	97.81	SCF43220	View
2	Cranberry-CNJ02-1-2007	LG1	N/A	79.54	SCF43220	View
3	Cranberry-Crimson_Queen-2007	LG1	N/A	71.2	SCF43220	View
4	Cranberry-Mullica_Queen-2007	LG1	N/A	89.9	SCF43220	View
5	Cranberry-CNJ02-1-2017	LG01	N/A	74.3	SCF43220	View
6	Cranberry-Crimson_Queen-2017	LG01	N/A	64.7	SCF43220	View
7	Cranberry-Mullica_Queen-2017	LG01	N/A	85.8	SCF43220	View
8	Cranberry-[BG//BL/BN]95-F1	LG01	N/A	34.75	SCF43220	View
9	Cranberry-Composite_map-F1	LG01	N/A	30.57	SCF43220	View
10	Cranberry-Crimson_Queen-F1	LG01	N/A	11.32	SCF43220	View
11	Cranberry-Mullica_Queen_1-F1	LG01	N/A	13.11	SCF43220	View
12	Cranberry-BB/CQ-F1	LG09	N/A	40.81	SCF43220	View
13	Cranberry-BB/CQ-F1	LG09	N/A	67.74	SCF43220	View