scf44a, scf44a (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	scf44a
Genbank ID	N/A
Type	SSR
Species	Vaccinium macrocarpon
Repeat Motif	(ag)19
Primer 1	scf44a.forward primer: ACAAAACCACTGGCGAAAAC
Primer 2	scf44a.reverse primer: GAGTGACCAGGGGAGATGAA
Max Length	259
Publication	[view all]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Vcev1_p0.Chr01	supercontig	Vcev1_p0.Chr01:54295877..54296119 .
VaccDscaff1	supercontig	VaccDscaff1:42454430..42454650 .
scaffold01917	supercontig	scaffold01917:34229..34460 .
chr1_H1	supercontig	chr1_H1:47884775..47885011 .
Vmac_chr06	supercontig	Vmac_chr06:36203190..36203428 .
chr6	supercontig	chr6:3439123..3439357 .

Publications


Year	Publication
2011	Georgi L, Herai RH, Vidal R, Falsarella Carazzolle M, Guimarães Pereira G, Polashock J, Vorsa N. Cranberry microsatellite marker development from assembled next-generation genomic sequence. Molecular breeding. 2011.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-[BGx(BLxNL)]95_x_ GH1x35-F1	LG6	N/A	119.01	scf44a	View
2	Cranberry-CNJ02-1-2007	LG6	N/A	4.81	scf44a	View
3	Cranberry-Crimson_Queen-2007	LG6	N/A	3.4	scf44a	View
4	Cranberry-Mullica_Queen-2007	LG6	N/A	7.3	scf44a	View
5	Cranberry-Unifiedmap2013	LG5	N/A	105	scf44a	View
6	Blueberry-F1#10_x_W85-23-F1-2017	LG06	N/A	8.2	scf44a	View
7	Blueberry-F1#10-2017	LG06	N/A	12.2	scf44a	View
8	Blueberry-W85-23-2017	LG06	N/A	0	scf44a	View
9	Cranberry-CNJ02-1-2017	LG06	N/A	0	scf44a	View
10	Cranberry-Crimson_Queen-2017	LG06	N/A	0	scf44a	View
11	Cranberry-Mullica_Queen-2017	LG06	N/A	0	scf44a	View
12	Cranberry-Composite_map-F1	LG06	N/A	87.4	scf44a	View
13	Cranberry-Crimson_Queen-F1	LG06	N/A	78.87	scf44a	View
14	Cranberry-Mullica_Queen_1-F1	LG06	N/A	105.39	scf44a	View
15	Cranberry-BB/CQ-F1	LG05	N/A	84.77	scf44a	View
16	Cranberry-BB/CQ-F1	LG05	N/A	6.72	scf44a	View