SCF65999, SCF65999 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	SCF65999
Genbank ID	KP278748
Type	SSR
Species	Vaccinium macrocarpon
Repeat Motif	(CT)11
Primer 1	SCF65999.forward primer: AGGTAGCATTAGACACGAGATT
Primer 2	SCF65999.reverse primer: GAGGTTTTACATGACCATTACC
Max Length	300
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	KP278748

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7_H1	supercontig	chr7_H1:11814997..11815269 .
Vmac_chr10	supercontig	Vmac_chr10:10794855..10795118 .
chr10	supercontig	chr10:9697820..9698083 .
27450_pilon_pilon	supercontig	27450_pilon_pilon:17322..17656 .
Chr07_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr07_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:29943484..29943812 .
Chr07_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr07_Vaccinium_vitis-idaea_ssp_minus:26513253..26513543 .

Publications


Year	Publication
2015	Schlautman B, Fajardo D, Bougie T, Wiesman E, Polashock J, Vorsa N, Steffan S, Zalapa J. Development and validation of 697 novel polymorphic genomic and EST-SSR markers in the American cranberry (Vaccinium macrocarpon Ait.). Molecules (Basel, Switzerland). 2015; 20(2):2001-13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-CNJ02-1-2007	LG10	N/A	35.77	SCF65999	View
2	Cranberry-Crimson_Queen-2007	LG10	N/A	28.3	SCF65999	View
3	Cranberry-Mullica_Queen-2007	LG10	N/A	40.9	SCF65999	View
4	Blueberry-F1#10_x_W85-23-F1-2017	LG10	N/A	38.4	SCF65999	View
5	Blueberry-F1#10-2017	LG10	N/A	46.7	SCF65999	View
6	Cranberry-CNJ02-1-2017	LG10	N/A	32.8	SCF65999	View
7	Cranberry-Crimson_Queen-2017	LG10	N/A	30.2	SCF65999	View
8	Cranberry-Composite_map-F1	LG10	N/A	50	SCF65999	View
9	Cranberry-Crimson_Queen-F1	LG10	N/A	50.68	SCF65999	View
10	Cranberry-Mullica_Queen_1-F1	LG10	N/A	51.89	SCF65999	View
11	Cranberry-Mullica_Queen_2-F1	LG10	N/A	46.38	SCF65999	View