Vaccinium microcarpum v1.0 genome sequence

Genome Overview
Analysis NameVaccinium microcarpum v1.0 genome sequence
MethodPacBio Sequel, Illumina (Assembly with Canu, Pilon)
SourceV. microcarpum
Date performed2020-11-18

 

GDV Accession Number: GDV20002

Citation: Diaz-Garcia L, Garcia-Ortega LF, Rodriguez MG, Delaye L, Iorizzo M, Zalapa J. 2020. Chromosome-level genome assembly of the American cranberry (Vaccinium macrocarpon Ait.) and its wild relative Vaccinium microcarpum.  Submitted to Horticulture Research.

Data Availability: This genome has been made available on GDV pre-publication as a public service, and in agreement with the Fort Lauderdale agreement, the V. microcarpum genome is being made available by the authors prior to peer-reviewed publication of the data. The authors and GDV are making this data available with the expectation and desire to publish this data in a reasonable time without preemption by other groups.  By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a whole genome or chromosome scale prior to publication by the original authors of a comprehensive genome analysis ("Reserved Analyses"). "Reserved analyses" include the identification of complete (whole genome) sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and whole-genome or chromosome-scale comparisons with other species.

Pre-publication, the genome gene and mRNA features can be searched within the GDV database, the genome can be viewed in JBrowse, and sequences can be queried against the genome sequence using the BLAST tool.  Upon publication, data files will be made available for download.  If you would like early access to the files before publication, please contact the corresponding authors, Juan Zalapa (jezalapa@wisc.edu) and Luis Diaz-Garcia (diazgarcia@wisc.edu).

Genome Assembly Summary:

Total Size 622,966,978 bases
Number of scaffolds 4,802
N50 176,334 bases
BUSCO score 87.4%
Properties
Additional information about this analysis:
Property NameValue
Analysis Typewhole_genome