GW397257

EST Overview
NameGW397257
Unique NameGW397257
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length223
Libraries
Library NameType
LIBEST_026032 Vaccinium corymbosum SSH-C.acutatum-resistancecdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9
Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2
Query:   13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9
Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2
Query:   13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9
Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2
Query:   13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9
Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2
Query:   13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9
Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2
Query:   13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_DANRE (Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.237e-9
Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = -2
Query:   13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132
            KVQ++M QPINLIFR+LQ+++RI +WL+EQ ++R++G II
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCII 48          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_DROME (Probable small nuclear ribonucleoprotein E OS=Drosophila melanogaster GN=CG18591 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 7.227e-9
Identity = 23/40 (57.50%), Postives = 35/40 (87.50%), Query Frame = -2
Query:   13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132
            KVQ++M QPINLIFR+LQ+++R+Q+WL+E   LR++G I+
Sbjct:    8 KVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIV 47          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUEL1_HUMAN (Putative small nuclear ribonucleoprotein polypeptide E-like protein 1 OS=Homo sapiens GN=SNRPEL1 PE=5 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 9.439e-9
Identity = 23/40 (57.50%), Postives = 37/40 (92.50%), Query Frame = -2
Query:   13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132
            KVQ++M QPINLIFR+LQ++++IQ+WL+EQ +++++G II
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCII 48          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_CAEBR (Probable small nuclear ribonucleoprotein E OS=Caenorhabditis briggsae GN=snr-6 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.610e-8
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            M+  K+Q++M QP+NLIFR+LQ++ R+QIWL+E    RL+G II
Sbjct:    1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYII 44          
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_CAEEL (Probable small nuclear ribonucleoprotein E OS=Caenorhabditis elegans GN=snr-6 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.103e-8
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            M+T K+ ++M QP+NLIFR+LQ++ R+QIWL+E    RL+G II
Sbjct:    1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYII 44          
BLAST of GW397257 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s10540.1 ()

HSP 1 Score: 82.8037 bits (203), Expect = 5.541e-17
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. P. persica 1.0 peptide
Match: ppa014076m ()

HSP 1 Score: 82.8037 bits (203), Expect = 3.772e-17
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. P. persica 1.0 peptide
Match: ppa014077m ()

HSP 1 Score: 82.8037 bits (203), Expect = 3.772e-17
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. P. persica 1.0 peptide
Match: ppa020341m ()

HSP 1 Score: 73.559 bits (179), Expect = 2.288e-14
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = -2
Query:   10 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSIID 144
            MA+TKV+RIMTQPINLI RFLQ KAR  IWLFEQKDLR+ G IID
Sbjct:    1 MASTKVKRIMTQPINLISRFLQHKARTHIWLFEQKDLRIKGRIID 45          
BLAST of GW397257 vs. TrEMBL
Match: D7SJ02|D7SJ02_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008301001 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.229e-15
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: A9NKR7|A9NKR7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.421e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MATT+VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MATTRVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: Q6Z2M5|Q6Z2M5_ORYSJ (Os02g0126700 protein OS=Oryza sativa subsp. japonica GN=P0482F12.18 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: D6BQM6|D6BQM6_9ROSI (Small nuclear ribonucleoprotein polypeptide OS=Jatropha curcas PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: C5XL26|C5XL26_SORBI (Putative uncharacterized protein Sb03g001950 OS=Sorghum bicolor GN=Sb03g001950 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: C4IYX9|C4IYX9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: B9T0H9|B9T0H9_RICCO (Small nuclear ribonucleoprotein E, putative OS=Ricinus communis GN=RCOM_0729670 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: B8AGZ5|B8AGZ5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05681 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: B6UAE3|B6UAE3_MAIZE (Small nuclear ribonucleoprotein E OS=Zea mays PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TrEMBL
Match: B6TNY9|B6TNY9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. Vitis vinifera peptide
Match: GSVIVT01008301001 (assembled CDS)

HSP 1 Score: 84.3445 bits (207), Expect = 1.108e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -2
Query:   13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144
            MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II
Sbjct:    1 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44          
BLAST of GW397257 vs. TAIR peptide
Match: AT4G30330.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr4:14836773-14837919 REVERSE LENGTH=88)

HSP 1 Score: 81.2629 bits (199), Expect = 1.379e-16
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = -2
Query:   16 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSI 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G I
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43          
BLAST of GW397257 vs. TAIR peptide
Match: AT2G18740.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:8123334-8124581 FORWARD LENGTH=78)

HSP 1 Score: 81.2629 bits (199), Expect = 1.379e-16
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = -2
Query:   16 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSI 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G I
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43          
BLAST of GW397257 vs. TAIR peptide
Match: AT2G18740.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:8123334-8124710 FORWARD LENGTH=88)

HSP 1 Score: 81.2629 bits (199), Expect = 1.379e-16
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = -2
Query:   16 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSI 144
            MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G I
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43          
The following BLAST results are available for this feature:
BLAST of GW397257 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RUXE_PIG1.115e-962.50Small nuclear ribonucleoprotein E OS=Sus scrofa GN... [more]
RUXE_MOUSE1.115e-962.50Small nuclear ribonucleoprotein E OS=Mus musculus ... [more]
RUXE_HUMAN1.115e-962.50Small nuclear ribonucleoprotein E OS=Homo sapiens ... [more]
RUXE_CHICK1.115e-962.50Small nuclear ribonucleoprotein E OS=Gallus gallus... [more]
RUXE_BOVIN1.115e-962.50Small nuclear ribonucleoprotein E OS=Bos taurus GN... [more]
RUXE_DANRE4.237e-960.00Small nuclear ribonucleoprotein E OS=Danio rerio G... [more]
RUXE_DROME7.227e-957.50Probable small nuclear ribonucleoprotein E OS=Dros... [more]
RUEL1_HUMAN9.439e-957.50Putative small nuclear ribonucleoprotein polypepti... [more]
RUXE_CAEBR1.610e-854.55Probable small nuclear ribonucleoprotein E OS=Caen... [more]
RUXE_CAEEL2.103e-854.55Probable small nuclear ribonucleoprotein E OS=Caen... [more]
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BLAST of GW397257 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0018s10540.15.541e-1790.91[more]
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BLAST of GW397257 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
ppa014076m3.772e-1790.91[more]
ppa014077m3.772e-1790.91[more]
ppa020341m2.288e-1480.00[more]
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BLAST of GW397257 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
D7SJ02|D7SJ02_VITVI4.229e-1593.18Whole genome shotgun sequence of line PN40024, sca... [more]
A9NKR7|A9NKR7_PICSI9.421e-1590.91Putative uncharacterized protein OS=Picea sitchens... [more]
Q6Z2M5|Q6Z2M5_ORYSJ1.230e-1490.91Os02g0126700 protein OS=Oryza sativa subsp. japoni... [more]
D6BQM6|D6BQM6_9ROSI1.230e-1490.91Small nuclear ribonucleoprotein polypeptide OS=Jat... [more]
C5XL26|C5XL26_SORBI1.230e-1490.91Putative uncharacterized protein Sb03g001950 OS=So... [more]
C4IYX9|C4IYX9_MAIZE1.230e-1490.91Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B9T0H9|B9T0H9_RICCO1.230e-1490.91Small nuclear ribonucleoprotein E, putative OS=Ric... [more]
B8AGZ5|B8AGZ5_ORYSI1.230e-1490.91Putative uncharacterized protein OS=Oryza sativa s... [more]
B6UAE3|B6UAE3_MAIZE1.230e-1490.91Small nuclear ribonucleoprotein E OS=Zea mays PE=4... [more]
B6TNY9|B6TNY9_MAIZE1.230e-1490.91Putative uncharacterized protein OS=Zea mays PE=4 ... [more]
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BLAST of GW397257 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010083010011.108e-1793.18assembled CDS[more]
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BLAST of GW397257 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G30330.11.379e-1690.70| Symbols: | Small nuclear ribonucleoprotein fami... [more]
AT2G18740.21.379e-1690.70| Symbols: | Small nuclear ribonucleoprotein fami... [more]
AT2G18740.11.379e-1690.70| Symbols: | Small nuclear ribonucleoprotein fami... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11193SNRNP SM FAMILY MEMBERcoord: 22..64
score: 5

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GW397257 ID=GW397257; Name=GW397257; organism=Vaccinium corymbosum; type=EST; length=223bp
ACTCGTCTTATCAATTATACTCCCATCAAGCCTCAAGTCCTTCTGCTCAA
ACAGCCATATCTGGATCCGAGCTTTACTTTGAAGGAACCTGAAGATGAGA
TTGATGGGTTGTGTCATGATCCTCTGGACTTTGGTGGTCGCCATGGCTGC
TGCTATCGACGGCCACAGAGTCGTCTCCTTCAGAAAACCTTGAAAGAAAT
TACCCTAGACGCCGCCCCCGCGT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: KEGG ORTHOLOGY
TermDefinition
K11097SNRPE, SME; small nuclear ribonucleoprotein E
Vocabulary: KEGG PATHWAY
TermDefinition
ko03020RNA polymerase
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated