Vaccinium duclouxii SGLD20220023 v1.0 genome
Genome Overview
Reference: Zeng T, He Z, He J, Lv W, Huang S, Li J, Zhu L, Wan S, Zhou W, Yang Z, Zhang Y, Luo C, He J, Wang C, Wang L. The telomere-to-telomere gap-free reference genome of wild blueberry (Vaccinium duclouxii) provides its high soluble sugar and anthocyanin accumulation. Horticulture research. 2023 Nov; 10(11):uhad209. This data is the complete genome assembly with accession number GWHDUEK00000000. Genome Assembly Summary:
Homology
Homology of the Vaccinium duclouxii SGLD20220023 genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2023-07), and UniProtKB/TrEMBL (Release 2023-07) databases. The best hit reports are available for download in Excel format. Protein Homologs
Assembly
Assembly: The Vaccinium duclouxii SGLD20220023 genome v1.0 assembly file is available in FASTA format. Downloads
Gene Prediction
Gene Prediction: The Vaccinium duclouxii SGLD20220023 genome v1.0 gene prediction files are available in FASTA and GFF3 formats. Downloads
Functional Analysis
Functional Analysis: Functional annotation files for the Vaccinium duclouxii SGLD20220023 genome v1.0 are available for download below. The Vaccinium duclouxii SGLD20220023 genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
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