BLAST


BLAST Search

Search for one or more of your sequences (using BLAST). First pick a query type (nucleotide or protein). You will be able to set search parameters on the next page. Choose the appropriate program based on the Query type and Target database type. Please click on the program name to view the search form.

Query Type Database Type BLAST Program
Nucleotide Nucleotide blastn: Search a nucleotide database using a nucleotide query.
Protein blastx: Search protein database using a translated nucleotide query.
Protein Nucleotide tblastn: Search translated nucleotide database using a protein query.
Protein blastp: Search protein database using a protein query.
BLAST Reference
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403–410.

Description and source of BLAST databases

Database Name Source
V. corymbosum NCBI ESTs Species specific ESTs from NCBI dbEST, downloaded 5/23/17
V. corymbosum genome scaffolds (Aug 2015) Blueberry assembly courtesy of Ann Loraine and Rob Reid
V. corymbosum unigene v1.0 contigs GDV assembled ESTs
V. corymbosum GDV RefTrans v1 GDV assembled RNA-Seq reads
V. macrocarpon genome WGS scaffolds (NCBI) Polashock et al, 2014 and PRJNA245813
V. macrocarpon transcriptome (NCBI) Polashock et al, 2014 and PRJNA246586