Vaccinium macrocarpon cv. Stevens v1.0 genome sequence

Genome Overview
Analysis NameVaccinium macrocarpon cv. Stevens v1.0 genome sequence
MethodPacBio Sequel, Illumina PE (Assembly with Canu, Pilon)
SourceV. macrocarpon cv. Stevens
Date performed2020-11-18

 

GDV Accession Number: GDV20001

Citation: Diaz-Garcia L, Garcia-Ortega LF, Rodriguez MG, Delaye L, Iorizzo M, Zalapa J. 2021. Chromosome-level genome assembly of the American cranberry (Vaccinium macrocarpon Ait.) and its wild relative Vaccinium microcarpum.  Frontiers in Plant Science. 12:633310

Genome Assembly Summary:

Total Size 490,294,896 bases
Number of scaffolds 350
N50 37,842,272 bases
Assembly BUSCO score (embryophyta_odb10) 93.4%
Annotation BUSCO score (embryophyta_odb10) 83.1%
Properties
Additional information about this analysis:
Property NameValue
JBrowse URLhttps://www.vaccinium.org/jbrowse/index.html?data=data/Cranberry/V_macrocarpon_Stevens_v1&
Analysis Typewhole_genome
Downloads

All the files below are also available on the GDV Data Repository.

V. macrocarpon genome, v1.0 assembly files:

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.