Vaccinium macrocarpon cv. Stevens v1.0 genome sequence

Genome Overview
Analysis NameVaccinium macrocarpon cv. Stevens v1.0 genome sequence
MethodPacBio Sequel, Illumina PE (Assembly with Canu, Pilon)
SourceV. macrocarpon cv. Stevens
Date performed2020-11-18


GDV Accession Number: GDV20001

Citation: Diaz-Garcia L, Garcia-Ortega LF, Rodriguez MG, Delaye L, Iorizzo M, Zalapa J. 2020. Chromosome-level genome assembly of the American cranberry (Vaccinium macrocarpon Ait.) and its wild relative Vaccinium microcarpum.  Accepted-Horticulture Research.

Data Availability: This genome has been made available on GDV pre-publication as a public service, and in agreement with the Fort Lauderdale agreement, the V. macrocarpon genome is being made available by the authors prior to peer-reviewed publication of the data. The authors and GDV are making this data available with the expectation and desire to publish this data in a reasonable time without preemption by other groups.  By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a whole genome or chromosome scale prior to publication by the original authors of a comprehensive genome analysis ("Reserved Analyses"). "Reserved analyses" include the identification of complete (whole genome) sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and whole-genome or chromosome-scale comparisons with other species.

Genome Assembly Summary:

Total Size 490,294,896 bases
Number of scaffolds 350
N50 37,842,272 bases
BUSCO score 93.4%
Additional information about this analysis:
Property NameValue
Analysis Typewhole_genome

All the files below are also available on the GDV Data Repository.

V. microcarpum genome, v1.0 assembly files:

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.