Vaccinium Pangenome Project Graph

The pangenome graph data provided by the Vaccinium Pangenome Project is available to view via the UCSC Genome Browser through GDV.  Below are links to the regions of the pangenome graph either by aligned against predicted reconstruction of ancestral genome or by cultivar.  You can navigate to different chromosomes within region by typing coordinates into the navigation bar at the top of the Genome Browser.  The table below lists the pangenome region and the genomes that are present.  Genomes that are in GDV, have hyperlinks to more information.  A brief tutorial on how to use the browser can be found here.

Link to Graph Region	Blueberry Genomes in Graph	Cranberry Genomes in Graph
By Ancestral Genome Region
Anc00	Raven	Black Veil, Cumberland, Budd's Blues, Early Richard, Stevens (vmacro)
Anc01	Raven	Black Veil, Cumberland, Budd's Blues, Early Richard
Anc02	Duke, Draper, Liberty, W85-20	Early Richard
Anc03	W85-20, Pioneer	Black Veil, Cumberland, Stevens (vmacro)
Anc04	Duke, Draper, Liberty, Brigitta Blue, Raven
Anc05	Duke, W85-20, Bluecrop, Elliot	Budd's Blues
Anc06	Raven	Black Veil, Budd's Blues, Early Richard, Lemunyon
Anc07	Misty	Black Veil, Budd's Blues, Early Richard, Lemunyon
Anc08	Duke, Draper, W85-20, Harding	Stevens (vmacro)
Anc09	Duke, Draper, W85-20, Bluecrop, Raven
Anc10	Bluecrop, Elliot, Rubel, Weymouth	Cumberland
Anc11	Raven	Budd's Blues, Early Black, Native Budd's Blues, Stanley US92
Anc12	Raven	Budd's Blues, Early Black, Cranmoor Natives, Garwood Bell
Anc13	Duke, Liberty, Brigitta Blue, Chandler, Raven
Anc14	Duke, Draper, Liberty, W85-20, Raven
Anc15	W85-20, Rubel, Raven, Harding, Arcadia
Anc16	W85-20, Raven, Harding, Misty, Pioneer
Anc17	Raven	Budd's Blues, Early Richard, Native Budd's Blues, Stanley US92
Anc18	Raven	Budd's Blues, Early Black, Native Budd's Blues, Stanley US92
Anc19	Raven	Early Black, Cranmoor Natives, Garwood Bell, Native Budd's Blues
Anc20	Duke, Draper, Liberty, Brigitta Blue, Raven
Anc21	Rubel, Weymouth, Raven, Arcadia	Black Veil
Anc22	Raven	Early Black, Cranmoor Natives, Native Budd's Blues, Stanley US92
Anc23	Rubel, Raven, Harding, Arcadia	Black Veil
Anc24	Raven, Harding, Misty, Arcadia	Stevens (vmacro)
Anc25	Raven, Harding, Misty, Pioneer	Stevens (vmacro)
Anc26	Chandler, Harding, Misty, Pioneer, Kee Krisp
Anc27	Chandler, Misty, Pioneer, Kee Krisp, Windsor
Anc28	Brigitta Blue, Pioneer, Kee Krisp, Windsor, Sharp Blue
Anc29	Brigitta Blue, Kee Krisp, Windsor, Sharp Blue, Meadowlark
Anc30	Liberty, Windsor, Sharp Blue, Meadowlark, Patrecia
Anc31	Liberty, Sharp Blue, Meadowlark, Patrecia, Farthing
Anc32	Draper, Meadowlark, Patrecia, Farthing, Southmoon
Anc33	Duke, Farthing, Southmoon, Optimus, Southern Belle
Anc34	W85-20, Optimus, Avon Blue, Legacy, Earlie Blue
Anc35	Duke, Southmoon, Optimus, Southern Belle, Avon Blue
Anc36	W85-20, Optimus, Southern Belle, Avon Blue, Legacy
Anc37	W85-20, Optimus, Avon Blue, Legacy, Earlie Blue
By Blueberry Cultivar
Arcadia	Elliot, Raven, Harding, Misty
Avon Blue	Elliot, Legacy, Earlie Blue, Stanley
Bluecrop	Duke, W85-20, Elliot, Arcadia
Brigitta Blue	Duke, Liberty, Chandler, Arcadia
Chandler	Duke, Liberty, Brigitta Blue, Arcadia
Draper	Duke, Liberty, Brigitta Blue, Arcadia
Duke	Draper, Liberty, Brigitta Blue, Arcadia
Earlie Blue	Elliot, Avon Blue, Legacy, Stanley
Elliot	Duke, W85-20, Bluecrop, Arcadia
Farthing	Elliot, Southmoon, Optimus, Southern Belle
Harding	Elliot, Misty, Pioneer, Kee Krisp
Kee Krisp	Elliot, Windsor, Sharp Blue, Meadowlark
Legacy	Elliot, Avon Blue, Earlie Blue, Stanley
Liberty	Duke, Brigitta Blue, Chandler, Arcadia
Meadowlark	Elliot, Patrecia, Farthing, Southmoon
Misty	Elliot, Pioneer, Kee Krisp, Windsor
Optimus	Elliot, Southern Belle, Avon Blue, Legacy
Patrecia	Elliot, Farthing, Southmoon, Optimus
Pioneer	Elliot, Kee Krisp, Windsor, Sharp Blue
Raven	Elliot, Harding, Misty, Pioneer
Rubel	Elliot, Weymouth, Raven, Arcadia
Sharp Blue	Elliot, Meadowlark, Patrecia, Farthing
Southern Belle	Elliot, Optimus, Avon Blue, Legacy
Southmoon	Elliot, Optimus, Southern Belle, Avon Blue
Stanley (Stanley 73)	Elliot, Avon Blue, Legacy, Earlie Blue
W85-20	Duke, Draper, Liberty, Arcadia
Weymouth	Elliot, Rubel, Raven, Arcadia
Windsor	Elliot, Sharp Blue, Meadowlark, Patrecia
By Cranberry Cultivar
Black Veil	Arcadia	Cumberland, Budd's Blues, Early Richard
Budd's Blues	Arcadia	Early Richard, Lemunyon, Native Budd's Blues
Cranmoor Natives	Arcadia	Early Black, Garwood Bell, Native Budd's Blues
Cumberland	Arcadia	Black Veil, Budd's Blues, Early Richard
Early Black	Arcadia	Cranmoor Natives, Garwood Bell, Native Budd's Blues
Early Richard	Arcadia	Budd's Blues, Lemunyon, Native Budd's Blues
Garwood Bell	Arcadia	Early Black, Cranmoor Natives, Native Budd's Blues
Lemunyon	Arcadia	Budd's Blues, Early Richard, Native Budd's Blues
Native Budd's Blues	Arcadia	Early Black, Cranmoor Natives, Stanley US92
Stanley US92	Arcadia	Early Black, Cranmoor Natives, Native Budd's Blues
Stevens (vmacro)	Arcadia	Black Veil, Cumberland, Budd's Blues