The pangenome graph data provided by the Vaccinium Pangenome Project is available to view via the UCSC Genome Browser through GDV. Below are links to the regions of the pangenome graph either by aligned against predicted reconstruction of ancestral genome or by cultivar. You can navigate to different chromosomes within region by typing coordinates into the navigation bar at the top of the Genome Browser. The table below lists the pangenome region and the genomes that are present. Genomes that are in GDV, have hyperlinks to more information. A brief tutorial on how to use the browser can be found here.
*predicted reconstruction of ancestral genome at a particular node. Below is the phylogeny
((((Black_veil_:0.00722459,Cumberland_:0.00722459)Anc06:0.00031299,((Budds_Blues_:0.00717794,(Early_Richard_:0.00647382,Lemunyon_:0.00647382)Anc17:0.000704122)Anc11:0.000353356,((Early_Black_:0.00697901,(Cranmoor_Natives_:0.00677004,Garwood_Bell_:0.00677004)Anc22:0.000208963)Anc18:0.000423688,(Native_BB_:0.00719122,Stanley_US92_:0.00719122)Anc19:0.000211472)Anc12:0.000128605)Anc07:6.28503e-06)Anc03:0.0168254,vmacro_:0.01)Anc01:1,((((Duke_:0.000476421,draper_:0.000476421)Anc13:0.000981894,(Liberty_:0.0013811,(Brigitta_Blue_:0.000242355,Chandler_:0.000242355)Anc20:0.00113875)Anc14:7.7212e-05)Anc08:0.00762685,w85_:0.01)Anc04:1,((Bluecrop_:0.00167809,Elliot_:0.00167809)Anc09:0.000600419,((Rubel_:0.00139428,Weymouth_:0.00139428)Anc15:0.000758517,((Raven_:0.00180891,(Harding_:0.00158382,(Misty_:0.00161393,(Pioneer_:0.00153843,(Kee_Krisp_:0.00128126,(Windsor_:0.0013457,(Sharp_Blue_:0.00126603,(Meadowlark_:0.00123773,(Patrecia_:0.00107333,(Farthing_:0.00100849,(Southmoon_:0.000925245,((Optimus_:0.000793152,Southern_Belle_:0.000793152)Anc34:4.60779e-05,(Avon_Blue_:0.00083445,(Legacy_:0.000723863,(Earlie_Blue_:0.000584437,Stanley_73_:0.000584437)Anc37:0.000139426)Anc36:0.000110586)Anc35:4.77984e-06)Anc33:8.60156e-05)Anc32:8.32421e-05)Anc31:6.48386e-05)Anc30:0.000164405)Anc29:2.82988e-05)Anc28:7.96728e-05)Anc27:1e-05)Anc26:0.000257173)Anc25:7.54995e-05)Anc24:1e-05)Anc23:0.000225094)Anc21:0.00034388,arcadia_:0.01)Anc16:1)Anc10:0.00012571)Anc05:0.00680666)Anc02:0.0152778)Anc00;