Publication Datasets

GDV Accession  Reference Data File(s)
GDV23001 Maule A, Diaz-Garcia L, Loarca J, Lopez-Moreno H, Johnson-Cicalese J, Vorsa N, Iorizzo M, Neyhart J, Zalapa J.  Of Buds and Bits: A QTL Study on Traditional Upright Traits and Modern Plot Phenotyping in Cranberry (Vaccinium macrocarpon Ait.).  2023.  Submitted.  Corresponding author:  Juan Zalapa (juan.zalapa@usda.gov) Data will be made available on GDV after acceptance
GDV22001 Blueberry Crop Ontology Trait Descriptors.  Collaboration between USDA Breeding Insight and GDV BIMS.  Manuscript in preparation. Spreadsheet of descriptors
GDV21004 Yu, J., Hulse-Kemp, A.M., Babiker, E., Staton, M. High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii). Horticulture Research 8, 228 (2021). Corresponding author: Meg Staton (mstaton1@utk.edu) V. darrowii  NJ8810/NJ8807 genome, secondary haplotype
GDV21003 Yu, J., Hulse-Kemp, A.M., Babiker, E., Staton, M. High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii). Horticulture Research 8, 228 (2021). Corresponding author: Meg Staton (mstaton1@utk.edu) V. darrowii  NJ8810/NJ8807 genome, primary haplotype
GDV21002

Kawash J, Colt K, Hartwick NT, Abramson BW, Vorsa N, Polashock JJ, Michael TP. Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. PloS one. 2022; 17(3):e0264966. Corresponding author: James Polashock (james.polashock@usda.gov)

V. oxycoccos NJ96-20 genome
GDV21001 Kawash J, Colt K, Hartwick NT, Abramson BW, Vorsa N, Polashock JJ, Michael TP. Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. PloS one. 2022; 17(3):e0264966. Corresponding author: James Polashock (james.polashock@usda.gov) V. macrocarpon cv. Ben Lear genome
GDV20002 Diaz-Garcia L, Garcia-Ortega LF, Rodriguez MG, Delaye L, Iorizzo M, Zalapa J. 2021. Chromosome-level genome assembly of the American cranberry (Vaccinium macrocarpon Ait.) and its wild relative Vaccinium microcarpum.  Frontiers in Plant Science. 12:633310.  Corresponding authors: Juan Zalapa (jezalapa@wisc.edu) and Luis Diaz-Garcia (diazgarcia@wisc.edu) V. microcarpum v1 genome
GDV20001 Diaz-Garcia L, Garcia-Ortega LF, Rodriguez MG, Delaye L, Iorizzo M, Zalapa J. 2021. Chromosome-level genome assembly of the American cranberry (Vaccinium macrocarpon Ait.) and its wild relative Vaccinium microcarpum.   Frontiers in Plant Science. 12:633310.   Corresponding authors: Juan Zalapa (jezalapa@wisc.edu) and Luis Diaz-Garcia (diazgarcia@wisc.edu) V. macrocarpon cv. Stevens v1 genome
GDV19002

Nusrat Sultana, Gerhard Menzel, Kathrin M. Seibt, Sònia Garcia, Beatrice Weber, Sedat Serçe, and Tony Heitkam. Genome-wide analysis of long terminal repeat retrotransposons from the cranberry Vaccinium macrocarpon. Journal of Berry Research. 2021 Jul 15(Preprint):1-21. Corresponding author:  Nusrat Sultana (nusrat_cyto.du@yahoo.com)

Description

Link to files on GDV-FTP

GDV19001

Nusrat Sultana, Gerhard Menzel, Tony Heitkam, Kenji K. Kojima, Weidong Bao, and Sedat Serçe.  Bioinformatic and Molecular Analysis of Satellite Repeat Diversity in Vaccinium genomes. Genes. 2020, 11(5): 527.  Corresponding Author: Nusrat Sultana (nusrat.bot@gmail.com

Description

Link to files on GDV-FTP