Vaccinium oxycoccos NJ96-20 v1.0 genome sequence

Genome Overview
Analysis NameVaccinium oxycoccos NJ96-20 v1.0 genome sequence
MethodOxford Nanopore GridION, Illumina NovaSeq (Minimap2, Miniasm, Racon, Pilon)
SourceV. oxycoccos, NJ96-20, Alaska wild
Date performed2021-06-17

 

GDV Accession Number:  GDV21002

Source: The sequencing and assembly of the V. oxycoccos genome is described in Joe Kawash, Kelly Colt, Nolan Hartwick, Brad Abramson, Nick Vorsa, James Polashock, Todd P. Michael.  2021.  Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. Submitted.  The biomaterial and raw reads are available on NCBI under BioProject PRJNA738865.

Genome Assembly Summary:

Total size 484,157,052 bases
Number of scaffolds 1692
N50 1,785,328 bases
Assembly BUSCO score (embryophyta_odb10) 95.3%
Annotation BUSCO score (embryophyta_odb10) 87.2%

Properties
Additional information about this analysis:
Property NameValue
Analysis Typewhole_genome
JBrowse URLhttps://www.vaccinium.org/jbrowse/index.html?data=data%2FCranberry%2FV_oxycoccos_NJ96-20_v1_f&
Download

All the files below are also available on the GDV Data Repository.

V. oxycoccos NJ96-20 genome, v1.0 assembly files:

These files will become available after publication

 

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.