|Analysis Name||Vaccinium oxycoccos NJ96-20 v1.0 genome sequence |
|Method||Oxford Nanopore GridION, Illumina NovaSeq (Minimap2, Miniasm, Racon, Pilon) |
|Source||V. oxycoccos, NJ96-20, Alaska wild |
|Date performed||2021-06-17 |
GDV Accession Number: GDV21002
Source: The sequencing and assembly of the V. oxycoccos genome is described in Kawash J, Colt K, Hartwick NT, Abramson BW, Vorsa N, Polashock JJ, Michael TP. Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. PloS one. 2022; 17(3):e0264966. The biomaterial and raw reads are available on NCBI under BioProject PRJNA738865.
Genome Assembly Summary:
|Number of scaffolds
|Assembly BUSCO score (embryophyta_odb10)
|Annotation BUSCO score (embryophyta_odb10)
Additional information about this analysis:
|Property Name||Value |
|Analysis Type||whole_genome |
|JBrowse URL||https://www.vaccinium.org/jbrowse/index.html?data=data%2FCranberry%2FV_oxycoccos_NJ96-20_v1_f& |
All the files below are also available on the GDV Data Repository.
V. oxycoccos NJ96-20 genome, v1.0 assembly files:
The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab. Results were parsed into an Excel format.