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Data Overview
Genes : 1157 mRNAs
Source
Number of mRNAs
NCBI gene and mRNA sequences
1157
Genomes (2)
Source
Vaccinium corymbosum cv. Draper v1.0 genome sequence
Vaccinium corymbosum W8520 draft genome sequence
Germplasm : 388 germplasm
Vaccinium angustifolium : 7
Germplasm Type
Number of germplasm
cultivar
4
breeding_research_material
3
Vaccinium angustifolium x Vaccinium corymbosum : 3
Germplasm Type
Number of germplasm
cultivar
3
Vaccinium ashei : 1
Germplasm Type
Number of germplasm
breeding_research_material
1
Vaccinium constablaei : 1
Germplasm Type
Number of germplasm
breeding_research_material
1
Vaccinium corymbosum : 185
Germplasm Type
Number of germplasm
cultivar
100
breeding_research_material
59
wild_unimproved
13
population
13
Vaccinium darrowii : 8
Germplasm Type
Number of germplasm
breeding_research_material
4
cultivar
3
wild_unimproved
1
Vaccinium deliciosum : 1
Germplasm Type
Number of germplasm
wild_unimproved
1
Vaccinium elliotti : 1
Germplasm Type
Number of germplasm
cultivar
1
Vaccinium hybrid cultivar : 1
Germplasm Type
Number of germplasm
cultivar
1
Vaccinium macrocarpon : 69
Germplasm Type
Number of germplasm
cultivar
28
breeding_research_material
22
population
14
wild_unimproved
5
Vaccinium myrtilloides : 1
Germplasm Type
Number of germplasm
wild_unimproved
1
Vaccinium myrtillus : 1
Germplasm Type
Number of germplasm
cultivar
1
Vaccinium ovatum : 5
Germplasm Type
Number of germplasm
breeding_research_material
4
cultivar
1
Vaccinium sp. : 37
Germplasm Type
Number of germplasm
cultivar
18
breeding_research_material
15
population
3
wild_unimproved
1
Vaccinium virgatum : 54
Germplasm Type
Number of germplasm
cultivar
37
breeding_research_material
17
Vaccinium vitis-idaea : 13
Germplasm Type
Number of germplasm
cultivar
9
breeding_research_material
4
Maps : 25 maps
Vaccinium corymbosum : 2
Map Type
Number of maps
genetic
2
Vaccinium macrocarpon : 20
Map Type
Number of maps
genetic
12
genomic
8
Vaccinium sp. : 3
Map Type
Number of maps
genetic
3
Markers : 15979 markers
Vaccinium corymbosum : 1741
Marker Type
Number of markers
SNP
1148
SSR
272
EST marker
190
EST-SSR
111
RAPD
9
HRM
8
CAPS
3
Vaccinium macrocarpon : 14220
Marker Type
Number of markers
SNP
12739
SSR
1376
EST-SSR
95
SCAR
10
Vaccinium myrtillus : 18
Marker Type
Number of markers
gene marker
17
SCAR
1
Phenotypes : 928 phenotypic measurements , 18 trait descriptors
Species
Number of trait descriptors
Number of phenotypic measurements
Symphysia poasana
3
3
Vaccinium acrobracteatum
3
3
Vaccinium angustifolium
6
8
Vaccinium arboreum
1
1
Vaccinium arctostaphylos
3
3
Vaccinium boreale
3
3
Vaccinium bracteatum
3
3
Vaccinium caesariense
6
6
Vaccinium calycinum
3
3
Vaccinium cespitosum
3
6
Vaccinium consanguineum
3
3
Vaccinium cornigerum
3
3
Vaccinium corymbodendron
3
3
Vaccinium corymbosum
12
296
Vaccinium crassifolium
4
5
Vaccinium cylindraceum
3
3
Vaccinium darrowii
3
27
Vaccinium delavayi
3
3
Vaccinium dependens
3
3
Vaccinium elliottii
4
41
Vaccinium floribundum
3
3
Vaccinium formosum
5
5
Vaccinium fuscatum
3
12
Vaccinium hirtum
3
3
Vaccinium horizontale
3
3
Vaccinium macrocarpon
12
214
Vaccinium membranaceum
3
3
Vaccinium moupinense
3
3
Vaccinium myrsinites
3
6
Vaccinium myrtilloides
4
4
Vaccinium myrtillus
3
18
Vaccinium oldhamii
3
3
Vaccinium ovalifolium
4
19
Vaccinium ovatum
5
22
Vaccinium oxycoccos
3
9
Vaccinium padifolium
3
3
Vaccinium parvifolium
6
9
Vaccinium phillyreoides
3
3
Vaccinium praestans
3
6
Vaccinium reticulatum
3
3
Vaccinium simulatum
3
3
Vaccinium smallii
3
3
Vaccinium spp.
7
52
Vaccinium stamineum
1
1
Vaccinium varingifolium
3
3
Vaccinium virgatum
8
87
Vaccinium vitis-idaea
1
2
QTL/MTL : 403 QTLs and 0 MTLs for 22 agronomic traits
Trait Category
Number of QTLs
Number of MTLs
biennial bearing index
1
0
Brix (soluble solids)
13
0
chilling requirement
3
0
cold tolerance
2
0
field fruit rot resistance
3
0
Fruit color intensity
11
0
Fruit color variation
15
0
Fruit eccentricity
34
0
Fruit length
32
0
Fruit length:width ratio
35
0
Fruit projected area
32
0
Fruit rot incidence
9
0
Fruit rot percent
10
0
Fruit shape: persistent homology
38
0
fruit weight
39
0
Fruit width
35
0
Proanthocyanidin content
22
0
sound fruit yield
1
0
titratable acidity
19
0
Total anthocyanin content
18
0
total fruit yield
4
0
Yield by area
27
0
Species : 15 species
Genus
Species
Vaccinium
angustifolium, angustifolium x Vaccinium corymbosum, ashei, constablaei, corymbosum, darrowii, deliciosum, elliotti, hybrid cultivar, macrocarpon, myrtilloides, myrtillus, ovatum, virgatum, vitis-idaea
Transcripts
Analysis Name
Number of features
Vaccinium corymbosum GDV RefTrans V1
Reference Transcriptomes : 39461