Data Overview

 
 Genes : 1157 mRNAs
SourceNumber of mRNAs
NCBI gene and mRNA sequences1157
 
 Genomes (2)
 
 Germplasm : 386 germplasm
 
 Vaccinium angustifolium : 7
Germplasm TypeNumber of germplasm
cultivar4
breeding_research_material3
 
 Vaccinium angustifolium x Vaccinium corymbosum : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Vaccinium ashei : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 Vaccinium constablaei : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 Vaccinium corymbosum : 185
Germplasm TypeNumber of germplasm
cultivar100
breeding_research_material59
population13
wild_unimproved13
 
 Vaccinium darrowii : 8
Germplasm TypeNumber of germplasm
breeding_research_material4
cultivar3
wild_unimproved1
 
 Vaccinium deliciosum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium elliotti : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium macrocarpon : 69
Germplasm TypeNumber of germplasm
cultivar28
breeding_research_material22
population14
wild_unimproved5
 
 Vaccinium myrtilloides : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium myrtillus : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium ovatum : 5
Germplasm TypeNumber of germplasm
breeding_research_material4
cultivar1
 
 Vaccinium sp. : 37
Germplasm TypeNumber of germplasm
cultivar18
breeding_research_material15
population3
wild_unimproved1
 
 Vaccinium virgatum : 54
Germplasm TypeNumber of germplasm
cultivar37
breeding_research_material17
 
 Vaccinium vitis-idaea : 13
Germplasm TypeNumber of germplasm
cultivar9
breeding_research_material4
 
 Maps : 31 maps
 
 Vaccinium corymbosum : 2
Map TypeNumber of maps
genetic2
 
 Vaccinium macrocarpon : 23
Map TypeNumber of maps
genetic15
genomic8
 
 Vaccinium sp. : 6
Map TypeNumber of maps
genetic6
 
 Markers : 89937 markers
 
 Vaccinium ashei : 23213
Marker TypeNumber of markers
SSR15550
SNP7353
Indel310
 
 Vaccinium corymbosum : 31894
Marker TypeNumber of markers
SSR17365
SNP13723
Indel485
EST marker190
EST-SSR111
RAPD9
HRM8
CAPS3
 
 Vaccinium macrocarpon : 14219
Marker TypeNumber of markers
SNP12739
SSR1375
EST-SSR95
SCAR10
 
 Vaccinium myrtillus : 18
Marker TypeNumber of markers
gene marker17
SCAR1
 
 Vaccinium sp. : 121
Marker TypeNumber of markers
SSR114
SNP4
EST MARKER3
 
 Vaccinium spp. : 20472
Marker TypeNumber of markers
SSR15611
SNP4648
Indel213
 
 Phenotypes : 928 phenotypic measurements , 18 trait descriptors
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Symphysia poasana33
Vaccinium acrobracteatum33
Vaccinium angustifolium68
Vaccinium arboreum11
Vaccinium arctostaphylos33
Vaccinium boreale33
Vaccinium bracteatum33
Vaccinium caesariense66
Vaccinium calycinum33
Vaccinium cespitosum36
Vaccinium consanguineum33
Vaccinium cornigerum33
Vaccinium corymbodendron33
Vaccinium corymbosum12296
Vaccinium crassifolium45
Vaccinium cylindraceum33
Vaccinium darrowii327
Vaccinium delavayi33
Vaccinium dependens33
Vaccinium elliottii441
Vaccinium floribundum33
Vaccinium formosum55
Vaccinium fuscatum312
Vaccinium hirtum33
Vaccinium horizontale33
Vaccinium macrocarpon12214
Vaccinium membranaceum33
Vaccinium moupinense33
Vaccinium myrsinites36
Vaccinium myrtilloides44
Vaccinium myrtillus318
Vaccinium oldhamii33
Vaccinium ovalifolium419
Vaccinium ovatum522
Vaccinium oxycoccos39
Vaccinium padifolium33
Vaccinium parvifolium69
Vaccinium phillyreoides33
Vaccinium praestans36
Vaccinium reticulatum33
Vaccinium simulatum33
Vaccinium smallii33
Vaccinium spp.752
Vaccinium stamineum11
Vaccinium varingifolium33
Vaccinium virgatum887
Vaccinium vitis-idaea12
 
 QTL/MTL : 403 QTLs and 0 MTLs for 22 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
biennial bearing index10
Brix (soluble solids)130
chilling requirement30
cold tolerance20
field fruit rot resistance30
Fruit color intensity110
Fruit color variation150
Fruit eccentricity340
Fruit length320
Fruit length:width ratio350
Fruit projected area320
Fruit rot incidence90
Fruit rot percent100
Fruit shape: persistent homology380
fruit weight390
Fruit width350
Proanthocyanidin content220
sound fruit yield10
titratable acidity190
Total anthocyanin content180
total fruit yield40
Yield by area270
 
 Species : 14 species
GenusSpecies
Vacciniumangustifolium, angustifolium x Vaccinium corymbosum, ashei, constablaei, corymbosum, darrowii, deliciosum, elliotti, macrocarpon, myrtilloides, myrtillus, ovatum, virgatum, vitis-idaea
 
 Transcripts
Analysis NameNumber of features
Vaccinium corymbosum GDV RefTrans V1Reference Transcriptomes : 39461