Data Overview

 
 Genes : 3151279 genes and 3193844 mRNAs
SourceNumber of genesNumber of mRNA
Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence3489538249
Vaccinium caesariense clone W85-20 P1 v2.0 genome sequence3318336515
Vaccinium corymbosum cv. Brigitta Blue v1.0 genome104907104907
Vaccinium corymbosum cv. Chandler v1.0 genome104100104100
Vaccinium corymbosum cv. Draper v1.0 genome sequence128559128559
Vaccinium corymbosum cv. Duke v1.0 genome104345104345
Vaccinium corymbosum cv. Earlie Blue v1.0 genome105411105411
Vaccinium corymbosum cv. Elliot v1.0 genome100735100735
Vaccinium corymbosum cv. Farthing v1.0 genome111143111143
Vaccinium corymbosum cv. Harding v1.0 genome104629104629
Vaccinium corymbosum cv. Indigocrisp v1.0 genome107506107506
Vaccinium corymbosum cv. Kee Krisp v1.0 genome107578107578
Vaccinium corymbosum cv. Legacy v1.0 genome105755105755
Vaccinium corymbosum cv. Meadowlark v1.0 genome105959105959
Vaccinium corymbosum cv. Misty v1.0 genome107806107806
Vaccinium corymbosum cv. Patrecia v1.0 genome106728106728
Vaccinium corymbosum cv. Pioneer v1.0 genome103857103857
Vaccinium corymbosum cv. Raven v1.0 genome108884108884
Vaccinium corymbosum cv. Rubel v1.0 genome104889104889
Vaccinium corymbosum cv. Sharp Blue v1.0 genome107881107881
Vaccinium corymbosum cv. Southern Belle v1.0 genome108098108098
Vaccinium corymbosum cv. Southmoon v1.0 genome108076108076
Vaccinium corymbosum cv. Stanley v1.0 genome105947105947
Vaccinium corymbosum cv. Weymouth v1.0 genome105498105498
Vaccinium corymbosum cv. Windsor v1.0 genome108557108557
Vaccinium corymbosum W8520 draft genome sequence6384070581
Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence3480936717
Vaccinium darrowii clone NJ8810/NJ8807 v2.4 genome sequence2971730959
Vaccinium macrocarpon Cranmoor Natives v1.0 genome3023130231
Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence6034985329
Vaccinium macrocarpon cv. Black Veil v1.0 genome2966429664
Vaccinium macrocarpon cv. Budd's Blues v1.0 genome2737427374
Vaccinium macrocarpon cv. Cumberland v1.0 genome2490724907
Vaccinium macrocarpon cv. Early Black v1.0 genome2902129021
Vaccinium macrocarpon cv. Early Richard v1.0 genome2879228792
Vaccinium macrocarpon cv. Garwood Bell v1.0 genome2700027000
Vaccinium macrocarpon cv. Lemunyon v1.0 genome2968429684
Vaccinium macrocarpon cv. Stanley US92 v1.0 genome2469024690
Vaccinium macrocarpon cv. Stevens v1.0 genome sequence2283622836
Vaccinium macrocarpon Native Budd's Blues v1.0 genome2719527195
Vaccinium microcarpum v1.0 genome sequence3014730147
Vaccinium myrtillus isolate NK2018 v1.0 genome sequence3640438891
Vaccinium oxycoccos NJ96-20 v1.0 genome sequence5969358214
 
 Genomes (43)
Source
Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence
Vaccinium caesariense clone W85-20 P1 v2.0 genome sequence
Vaccinium corymbosum cv. Brigitta Blue v1.0 genome
Vaccinium corymbosum cv. Chandler v1.0 genome
Vaccinium corymbosum cv. Draper v1.0 genome sequence
Vaccinium corymbosum cv. Duke v1.0 genome
Vaccinium corymbosum cv. Earlie Blue v1.0 genome
Vaccinium corymbosum cv. Elliot v1.0 genome
Vaccinium corymbosum cv. Farthing v1.0 genome
Vaccinium corymbosum cv. Harding v1.0 genome
Vaccinium corymbosum cv. Indigocrisp v1.0 genome
Vaccinium corymbosum cv. Kee Krisp v1.0 genome
Vaccinium corymbosum cv. Legacy v1.0 genome
Vaccinium corymbosum cv. Meadowlark v1.0 genome
Vaccinium corymbosum cv. Misty v1.0 genome
Vaccinium corymbosum cv. Patrecia v1.0 genome
Vaccinium corymbosum cv. Pioneer v1.0 genome
Vaccinium corymbosum cv. Raven v1.0 genome
Vaccinium corymbosum cv. Rubel v1.0 genome
Vaccinium corymbosum cv. Sharp Blue v1.0 genome
Vaccinium corymbosum cv. Southern Belle v1.0 genome
Vaccinium corymbosum cv. Southmoon v1.0 genome
Vaccinium corymbosum cv. Stanley v1.0 genome
Vaccinium corymbosum cv. Weymouth v1.0 genome
Vaccinium corymbosum cv. Windsor v1.0 genome
Vaccinium corymbosum W8520 draft genome sequence
Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence
Vaccinium darrowii clone NJ8810/NJ8807 v2.4 genome sequence
Vaccinium macrocarpon Cranmoor Natives v1.0 genome
Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence
Vaccinium macrocarpon cv. Black Veil v1.0 genome
Vaccinium macrocarpon cv. Budd's Blues v1.0 genome
Vaccinium macrocarpon cv. Cumberland v1.0 genome
Vaccinium macrocarpon cv. Early Black v1.0 genome
Vaccinium macrocarpon cv. Early Richard v1.0 genome
Vaccinium macrocarpon cv. Garwood Bell v1.0 genome
Vaccinium macrocarpon cv. Lemunyon v1.0 genome
Vaccinium macrocarpon cv. Stanley US92 v1.0 genome
Vaccinium macrocarpon cv. Stevens v1.0 genome sequence
Vaccinium macrocarpon Native Budd's Blues v1.0 genome
Vaccinium microcarpum v1.0 genome sequence
Vaccinium myrtillus isolate NK2018 v1.0 genome sequence
Vaccinium oxycoccos NJ96-20 v1.0 genome sequence
 
 Germplasm : 396 germplasm
 
 Vaccinium angustifolium : 7
Germplasm TypeNumber of germplasm
cultivar4
breeding_research_material3
 
 Vaccinium angustifolium x Vaccinium corymbosum : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Vaccinium ashei : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 Vaccinium constablaei : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 Vaccinium corymbosum : 196
Germplasm TypeNumber of germplasm
cultivar104
breeding_research_material60
population19
wild_unimproved13
 
 Vaccinium darrowii : 8
Germplasm TypeNumber of germplasm
breeding_research_material4
cultivar3
wild_unimproved1
 
 Vaccinium deliciosum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium elliotti : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium macrocarpon : 69
Germplasm TypeNumber of germplasm
cultivar28
breeding_research_material22
population14
wild_unimproved5
 
 Vaccinium myrtilloides : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium myrtillus : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium ovatum : 5
Germplasm TypeNumber of germplasm
breeding_research_material4
cultivar1
 
 Vaccinium sp. : 36
Germplasm TypeNumber of germplasm
cultivar17
breeding_research_material15
population3
wild_unimproved1
 
 Vaccinium virgatum : 54
Germplasm TypeNumber of germplasm
cultivar37
breeding_research_material17
 
 Vaccinium vitis-idaea : 13
Germplasm TypeNumber of germplasm
cultivar9
breeding_research_material4
 
 Maps : 38 maps
 
 Vaccinium corymbosum : 8
Map TypeNumber of maps
genetic8
 
 Vaccinium macrocarpon : 23
Map TypeNumber of maps
genetic15
physical8
 
 Vaccinium sp. : 7
Map TypeNumber of maps
genetic7
 
 Markers : 245127 markers
 
 Vaccinium ashei : 23213
Marker TypeNumber of markers
SSR15550
SNP7353
Indel310
 
 Vaccinium corymbosum : 169545
Marker TypeNumber of markers
SNP151363
SSR17367
Indel485
EST marker193
EST-SSR117
RAPD9
HRM8
CAPS3
 
 Vaccinium floribundum : 30
Marker TypeNumber of markers
SSR30
 
 Vaccinium macrocarpon : 14224
Marker TypeNumber of markers
SNP12742
SSR1377
EST-SSR95
SCAR10
 
 Vaccinium myrtillus : 18
Marker TypeNumber of markers
gene marker17
SCAR1
 
 Vaccinium sp. : 17607
Marker TypeNumber of markers
SNP17490
SSR114
EST marker3
 
 Vaccinium spp. : 20490
Marker TypeNumber of markers
SSR15615
SNP4648
Indel213
gene marker14
 
 Phenotypes : 928 phenotypic measurements , 18 trait descriptors
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Symphysia poasana33
Vaccinium acrobracteatum33
Vaccinium angustifolium68
Vaccinium arboreum11
Vaccinium arctostaphylos33
Vaccinium boreale33
Vaccinium bracteatum33
Vaccinium caesariense66
Vaccinium calycinum33
Vaccinium cespitosum36
Vaccinium consanguineum33
Vaccinium cornigerum33
Vaccinium corymbodendron33
Vaccinium corymbosum12296
Vaccinium crassifolium45
Vaccinium cylindraceum33
Vaccinium darrowii327
Vaccinium delavayi33
Vaccinium dependens33
Vaccinium elliottii441
Vaccinium floribundum33
Vaccinium formosum55
Vaccinium fuscatum312
Vaccinium hirtum33
Vaccinium horizontale33
Vaccinium macrocarpon12214
Vaccinium membranaceum33
Vaccinium moupinense33
Vaccinium myrsinites36
Vaccinium myrtilloides44
Vaccinium myrtillus318
Vaccinium oldhamii33
Vaccinium ovalifolium419
Vaccinium ovatum522
Vaccinium oxycoccos39
Vaccinium padifolium33
Vaccinium parvifolium69
Vaccinium phillyreoides33
Vaccinium praestans36
Vaccinium reticulatum33
Vaccinium simulatum33
Vaccinium smallii33
Vaccinium spp.752
Vaccinium stamineum11
Vaccinium varingifolium33
Vaccinium virgatum887
Vaccinium vitis-idaea12
 
 QTL/MTL : 816 QTLs and 0 MTLs for 85 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
Abscission force: change10
Abscission force: ripe10
Berry scar size20
biennial bearing index10
Brix (soluble solids)90
Brix (soluble solids)130
chilling requirement60
Chlorogenic acid content30
cold tolerance40
Cyanidin 3-(6-acetyl)galactoside content30
Cyanidin 3-(6-acetyl)glucoside content110
Cyanidin arabinoside content20
Cyanidin galactoside content120
Cyanidin glucoside content80
Delphinidin 3-(6-acetyl)galactoside content40
Delphinidin 3-(6-acetyl)glucoside content100
Delphinidin arabinoside content10
Delphinidin galactoside content70
Delphinidin glucoside content60
field fruit rot resistance30
Fruit color intensity110
Fruit color intensity60
Fruit color variation150
Fruit eccentricity340
Fruit firmness20
Fruit firmness20
Fruit firmness retention10
Fruit length320
Fruit length:width ratio350
fruit pH120
Fruit projected area320
Fruit rot incidence90
Fruit rot percent100
Fruit shape: persistent homology380
fruit weight130
fruit weight410
Fruit width350
Malvidin 3-(6-acetyl)galactoside content50
Malvidin 3-(6-acetyl)glucoside content140
Malvidin arabinoside content90
Malvidin galactoside content130
Malvidin glucoside content90
Peonidin 3-(6-acetyl)galactoside content40
Peonidin 3-(6-acetyl)glucoside content80
Peonidin arabinoside content20
Peonidin galactoside content150
Peonidin glucoside content80
Percent acylated anthocyanins50
Percent acylated cyanidin60
Percent acylated delphinidin10
Percent acylated malvidin50
Percent arabinoside30
Percent cyanidin30
Percent cyanidin acetyl glucoside40
Percent cyanidin arabinoside100
Percent cyanidin galactoside60
Percent delphinidin acetyl glucoside20
Percent delphinidin arabinoside20
Percent delphinidin galactoside30
Percent delphinidin glucoside30
Percent galactoside30
Percent glucoside30
Percent malvidin acetyl galactoside40
Percent malvidin arabinoside30
Percent malvidin galactoside30
Percent peonidin galactoside90
Percent petunidin acetyl glucoside70
Percent petunidin galactoside30
Petunidin 3-(6-acetyl)galactoside content30
Petunidin 3-(6-acetyl)glucoside content170
Petunidin arabinoside content10
Petunidin galactoside content100
Petunidin glucoside content70
Proanthocyanidin content220
sound fruit yield10
SS:TA ratio30
titratable acidity190
titratable acidity110
Total 3-arabinoside content90
Total 3-galactoside content120
Total 3-glucoside content100
Total (6-acetyl)galactoside content40
Total (6-acetyl)glucoside content110
Total anthocyanin content180
Total anthocyanin content70
Total delphinidin content20
total fruit yield40
Total malvidin content20
Total peonidin content20
Total petunidin content40
Yield by area270
 
 Species : 14 species
GenusSpecies
Vacciniumangustifolium, angustifolium x Vaccinium corymbosum, ashei, constablaei, corymbosum, darrowii, deliciosum, elliotti, macrocarpon, myrtilloides, myrtillus, ovatum, virgatum, vitis-idaea
 
 Transcripts
Analysis NameNumber of features
Vaccinium corymbosum GDV RefTrans V1Reference Transcriptomes : 39461