Data Overview

Genes : 1157 mRNAs

Source	Number of mRNAs
NCBI gene and mRNA sequences	1157

Genomes (4)

Source
Vaccinium corymbosum cv. Draper v1.0 genome sequence
Vaccinium corymbosum W8520 draft genome sequence
Vaccinium macrocarpon cv. Stevens v1.0 genome sequence
Vaccinium microcarpum v1.0 genome sequence

Germplasm : 386 germplasm

Vaccinium angustifolium : 7

Germplasm Type	Number of germplasm
cultivar	4
breeding_research_material	3

Vaccinium angustifolium x Vaccinium corymbosum : 2

Germplasm Type	Number of germplasm
cultivar	2

Vaccinium ashei : 1

Germplasm Type	Number of germplasm
breeding_research_material	1

Vaccinium constablaei : 1

Germplasm Type	Number of germplasm
breeding_research_material	1

Vaccinium corymbosum : 185

Germplasm Type	Number of germplasm
cultivar	100
breeding_research_material	59
population	13
wild_unimproved	13

Vaccinium darrowii : 8

Germplasm Type	Number of germplasm
breeding_research_material	4
cultivar	3
wild_unimproved	1

Vaccinium deliciosum : 1

Germplasm Type	Number of germplasm
wild_unimproved	1

Vaccinium elliotti : 1

Germplasm Type	Number of germplasm
cultivar	1

Vaccinium macrocarpon : 69

Germplasm Type	Number of germplasm
cultivar	28
breeding_research_material	22
population	14
wild_unimproved	5

Vaccinium myrtilloides : 1

Germplasm Type	Number of germplasm
wild_unimproved	1

Vaccinium myrtillus : 1

Germplasm Type	Number of germplasm
cultivar	1

Vaccinium ovatum : 5

Germplasm Type	Number of germplasm
breeding_research_material	4
cultivar	1

Vaccinium sp. : 37

Germplasm Type	Number of germplasm
cultivar	18
breeding_research_material	15
population	3
wild_unimproved	1

Vaccinium virgatum : 54

Germplasm Type	Number of germplasm
cultivar	37
breeding_research_material	17

Vaccinium vitis-idaea : 13

Germplasm Type	Number of germplasm
cultivar	9
breeding_research_material	4

Maps : 31 maps

Vaccinium corymbosum : 2

Map Type	Number of maps
genetic	2

Vaccinium macrocarpon : 23

Map Type	Number of maps
genetic	15
genomic	8

Vaccinium sp. : 6

Map Type	Number of maps
genetic	6

Markers : 89951 markers

Vaccinium ashei : 23213

Marker Type	Number of markers
SSR	15550
SNP	7353
Indel	310

Vaccinium corymbosum : 31894

Marker Type	Number of markers
SSR	17365
SNP	13723
Indel	485
EST marker	190
EST-SSR	111
RAPD	9
HRM	8
CAPS	3

Vaccinium macrocarpon : 14219

Marker Type	Number of markers
SNP	12739
SSR	1375
EST-SSR	95
SCAR	10

Vaccinium myrtillus : 18

Marker Type	Number of markers
gene marker	17
SCAR	1

Vaccinium sp. : 121

Marker Type	Number of markers
SSR	114
SNP	4
EST MARKER	3

Vaccinium spp. : 20486

Marker Type	Number of markers
SSR	15611
SNP	4648
Indel	213
GENE MARKER	14

Phenotypes : 928 phenotypic measurements , 18 trait descriptors

Species	Number of trait descriptors	Number of phenotypic measurements
Symphysia poasana	3	3
Vaccinium acrobracteatum	3	3
Vaccinium angustifolium	6	8
Vaccinium arboreum	1	1
Vaccinium arctostaphylos	3	3
Vaccinium boreale	3	3
Vaccinium bracteatum	3	3
Vaccinium caesariense	6	6
Vaccinium calycinum	3	3
Vaccinium cespitosum	3	6
Vaccinium consanguineum	3	3
Vaccinium cornigerum	3	3
Vaccinium corymbodendron	3	3
Vaccinium corymbosum	12	296
Vaccinium crassifolium	4	5
Vaccinium cylindraceum	3	3
Vaccinium darrowii	3	27
Vaccinium delavayi	3	3
Vaccinium dependens	3	3
Vaccinium elliottii	4	41
Vaccinium floribundum	3	3
Vaccinium formosum	5	5
Vaccinium fuscatum	3	12
Vaccinium hirtum	3	3
Vaccinium horizontale	3	3
Vaccinium macrocarpon	12	214
Vaccinium membranaceum	3	3
Vaccinium moupinense	3	3
Vaccinium myrsinites	3	6
Vaccinium myrtilloides	4	4
Vaccinium myrtillus	3	18
Vaccinium oldhamii	3	3
Vaccinium ovalifolium	4	19
Vaccinium ovatum	5	22
Vaccinium oxycoccos	3	9
Vaccinium padifolium	3	3
Vaccinium parvifolium	6	9
Vaccinium phillyreoides	3	3
Vaccinium praestans	3	6
Vaccinium reticulatum	3	3
Vaccinium simulatum	3	3
Vaccinium smallii	3	3
Vaccinium spp.	7	52
Vaccinium stamineum	1	1
Vaccinium varingifolium	3	3
Vaccinium virgatum	8	87
Vaccinium vitis-idaea	1	2

QTL/MTL : 403 QTLs and 0 MTLs for 22 agronomic traits

Trait Category	Number of QTLs	Number of MTLs
biennial bearing index	1	0
Brix (soluble solids)	13	0
chilling requirement	3	0
cold tolerance	2	0
field fruit rot resistance	3	0
Fruit color intensity	11	0
Fruit color variation	15	0
Fruit eccentricity	34	0
Fruit length	32	0
Fruit length:width ratio	35	0
Fruit projected area	32	0
Fruit rot incidence	9	0
Fruit rot percent	10	0
Fruit shape: persistent homology	38	0
fruit weight	39	0
Fruit width	35	0
Proanthocyanidin content	22	0
sound fruit yield	1	0
titratable acidity	19	0
Total anthocyanin content	18	0
total fruit yield	4	0
Yield by area	27	0

Species : 14 species

Genus	Species
Vaccinium	angustifolium, angustifolium x Vaccinium corymbosum, ashei, constablaei, corymbosum, darrowii, deliciosum, elliotti, macrocarpon, myrtilloides, myrtillus, ovatum, virgatum, vitis-idaea

Transcripts

Analysis Name	Number of features
Vaccinium corymbosum GDV RefTrans V1	Reference Transcriptomes : 39461