Data Overview

 
 Genes : 3288063 genes and 3404332 mRNAs
SourceNumber of genesNumber of mRNA
Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence3489538249
Vaccinium caesariense clone W85-20 P1 v2.0 genome sequence3318336515
Vaccinium corymbosum cv. Brigitta Blue v1.0 genome104907104907
Vaccinium corymbosum cv. Chandler v1.0 genome104100104100
Vaccinium corymbosum cv. Draper v1.0 genome sequence128559128559
Vaccinium corymbosum cv. Duke v1.0 genome104345104345
Vaccinium corymbosum cv. Earlie Blue v1.0 genome105411105411
Vaccinium corymbosum cv. Elliot v1.0 genome100735100735
Vaccinium corymbosum cv. Farthing v1.0 genome111143111143
Vaccinium corymbosum cv. Harding v1.0 genome104629104629
Vaccinium corymbosum cv. Indigocrisp v1.0 genome107506107506
Vaccinium corymbosum cv. Kee Krisp v1.0 genome107578107578
Vaccinium corymbosum cv. Legacy v1.0 genome105755105755
Vaccinium corymbosum cv. Meadowlark v1.0 genome105959105959
Vaccinium corymbosum cv. Misty v1.0 genome107806107806
Vaccinium corymbosum cv. Patrecia v1.0 genome106728106728
Vaccinium corymbosum cv. Pioneer v1.0 genome103857103857
Vaccinium corymbosum cv. Raven v1.0 genome108884108884
Vaccinium corymbosum cv. Rubel v1.0 genome104889104889
Vaccinium corymbosum cv. Sharp Blue v1.0 genome107881107881
Vaccinium corymbosum cv. Southern Belle v1.0 genome108098108098
Vaccinium corymbosum cv. Southmoon v1.0 genome108076108076
Vaccinium corymbosum cv. Stanley v1.0 genome105947105947
Vaccinium corymbosum cv. Weymouth v1.0 genome105498105498
Vaccinium corymbosum cv. Windsor v1.0 genome108557108557
Vaccinium corymbosum W8520 draft genome sequence6384070581
Vaccinium darrowii Camp v1.0 genome sequence4181541815
Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence3480936717
Vaccinium darrowii clone NJ8810/NJ8807 v2.4 genome sequence2971730959
Vaccinium duclouxii SGLD20220023 v1.0 genome4193841938
Vaccinium macrocarpon Cranmoor Natives v1.0 genome3023130231
Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence6034985329
Vaccinium macrocarpon cv. Black Veil v1.0 genome2966429664
Vaccinium macrocarpon cv. Budd's Blues v1.0 genome2737427374
Vaccinium macrocarpon cv. Cumberland v1.0 genome2490724907
Vaccinium macrocarpon cv. Early Black v1.0 genome2902129021
Vaccinium macrocarpon cv. Early Richard v1.0 genome2879228792
Vaccinium macrocarpon cv. Garwood Bell v1.0 genome2700027000
Vaccinium macrocarpon cv. Le Munyon v1.0 genome2968429684
Vaccinium macrocarpon cv. Stanley US92 v1.0 genome2469024690
Vaccinium macrocarpon cv. Stevens v1.0 genome sequence2283622836
Vaccinium macrocarpon Native Budd's Blues v1.0 genome2719527195
Vaccinium microcarpum v1.0 genome sequence3014730147
Vaccinium myrtillus isolate NK2018 v1.0 genome sequence3640438891
Vaccinium oxycoccos NJ96-20 v1.0 genome sequence5969358214
Vaccinium vitis-idaea ssp. minus v1.0 genome2578960165
Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome2724266570
 
 Genomes (47)
Source
Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence
Vaccinium caesariense clone W85-20 P1 v2.0 genome sequence
Vaccinium corymbosum cv. Brigitta Blue v1.0 genome
Vaccinium corymbosum cv. Chandler v1.0 genome
Vaccinium corymbosum cv. Draper v1.0 genome sequence
Vaccinium corymbosum cv. Duke v1.0 genome
Vaccinium corymbosum cv. Earlie Blue v1.0 genome
Vaccinium corymbosum cv. Elliot v1.0 genome
Vaccinium corymbosum cv. Farthing v1.0 genome
Vaccinium corymbosum cv. Harding v1.0 genome
Vaccinium corymbosum cv. Indigocrisp v1.0 genome
Vaccinium corymbosum cv. Kee Krisp v1.0 genome
Vaccinium corymbosum cv. Legacy v1.0 genome
Vaccinium corymbosum cv. Meadowlark v1.0 genome
Vaccinium corymbosum cv. Misty v1.0 genome
Vaccinium corymbosum cv. Patrecia v1.0 genome
Vaccinium corymbosum cv. Pioneer v1.0 genome
Vaccinium corymbosum cv. Raven v1.0 genome
Vaccinium corymbosum cv. Rubel v1.0 genome
Vaccinium corymbosum cv. Sharp Blue v1.0 genome
Vaccinium corymbosum cv. Southern Belle v1.0 genome
Vaccinium corymbosum cv. Southmoon v1.0 genome
Vaccinium corymbosum cv. Stanley v1.0 genome
Vaccinium corymbosum cv. Weymouth v1.0 genome
Vaccinium corymbosum cv. Windsor v1.0 genome
Vaccinium corymbosum W8520 draft genome sequence
Vaccinium darrowii Camp v1.0 genome sequence
Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence
Vaccinium darrowii clone NJ8810/NJ8807 v2.4 genome sequence
Vaccinium duclouxii SGLD20220023 v1.0 genome
Vaccinium macrocarpon Cranmoor Natives v1.0 genome
Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence
Vaccinium macrocarpon cv. Black Veil v1.0 genome
Vaccinium macrocarpon cv. Budd's Blues v1.0 genome
Vaccinium macrocarpon cv. Cumberland v1.0 genome
Vaccinium macrocarpon cv. Early Black v1.0 genome
Vaccinium macrocarpon cv. Early Richard v1.0 genome
Vaccinium macrocarpon cv. Garwood Bell v1.0 genome
Vaccinium macrocarpon cv. Le Munyon v1.0 genome
Vaccinium macrocarpon cv. Stanley US92 v1.0 genome
Vaccinium macrocarpon cv. Stevens v1.0 genome sequence
Vaccinium macrocarpon Native Budd's Blues v1.0 genome
Vaccinium microcarpum v1.0 genome sequence
Vaccinium myrtillus isolate NK2018 v1.0 genome sequence
Vaccinium oxycoccos NJ96-20 v1.0 genome sequence
Vaccinium vitis-idaea ssp. minus v1.0 genome
Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome
 
 Germplasm : 572 germplasm
 
 Vaccinium acrobracteatum : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium angustifolium : 8
Germplasm TypeNumber of germplasm
cultivar4
breeding_research_material3
wild_unimproved1
 
 Vaccinium angustifolium x Vaccinium corymbosum : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Vaccinium arboreum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium arctostaphylos : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium ashei : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 Vaccinium boreale : 2
Germplasm TypeNumber of germplasm
wild_unimproved1
breeding_research_material1
 
 Vaccinium bracteatum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium caesariense : 2
Germplasm TypeNumber of germplasm
breeding_research_material1
wild_unimproved1
 
 Vaccinium calycinum : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Vaccinium cespitosum : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Vaccinium consanguineum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium constablaei : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 Vaccinium cornigerum : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium corymbosum : 239
Germplasm TypeNumber of germplasm
cultivar111
breeding_research_material79
wild_unimproved29
population20
 
 Vaccinium crassifolium : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Vaccinium cylindraceum : 2
Germplasm TypeNumber of germplasm
wild_unimproved1
cultivar1
 
 Vaccinium darrowii : 18
Germplasm TypeNumber of germplasm
wild_unimproved11
breeding_research_material4
cultivar3
 
 Vaccinium delavayi : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium deliciosum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium dependens : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium elliotti : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium elliottii : 14
Germplasm TypeNumber of germplasm
breeding_research_material12
wild_unimproved2
 
 Vaccinium floribundum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium formosum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium fuscatum : 3
Germplasm TypeNumber of germplasm
wild_unimproved3
 
 Vaccinium hirtum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium horizontale : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium macrocarpon : 99
Germplasm TypeNumber of germplasm
cultivar41
breeding_research_material31
population20
wild_unimproved7
 
 Vaccinium membranaceum : 6
Germplasm TypeNumber of germplasm
wild_unimproved6
 
 Vaccinium meridionale : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Vaccinium moupinense : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium myrsinites : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium myrtilloides : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Vaccinium myrtillus : 6
Germplasm TypeNumber of germplasm
wild_unimproved5
cultivar1
 
 Vaccinium myrtoides : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium oldhamii : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium ovalifolium : 6
Germplasm TypeNumber of germplasm
wild_unimproved4
breeding_research_material1
cultivar1
 
 Vaccinium ovatum : 22
Germplasm TypeNumber of germplasm
breeding_research_material13
wild_unimproved7
cultivar2
 
 Vaccinium oxycoccos : 3
Germplasm TypeNumber of germplasm
wild_unimproved2
cultivar1
 
 Vaccinium padifolium : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Vaccinium parvifolium : 3
Germplasm TypeNumber of germplasm
wild_unimproved3
 
 Vaccinium phillyreoides : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium poasanum : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium praestans : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Vaccinium reticulatum : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium simulatum : 2
Germplasm TypeNumber of germplasm
breeding_research_material1
wild_unimproved1
 
 Vaccinium smallii : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Vaccinium sp. : 62
Germplasm TypeNumber of germplasm
cultivar31
breeding_research_material19
population7
wild_unimproved5
 
 Vaccinium varingifolium : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Vaccinium virgatum : 66
Germplasm TypeNumber of germplasm
cultivar43
breeding_research_material21
wild_unimproved2
 
 Vaccinium vitis-idaea : 15
Germplasm TypeNumber of germplasm
cultivar13
breeding_research_material1
wild_unimproved1
 
 Maps : 39 maps
 
 Vaccinium corymbosum : 8
Map TypeNumber of maps
genetic8
 
 Vaccinium macrocarpon : 23
Map TypeNumber of maps
genetic15
physical8
 
 Vaccinium sp. : 8
Map TypeNumber of maps
genetic8
 
 Markers : 269522 markers
 
 Vaccinium ashei : 23213
Marker TypeNumber of markers
SSR15550
SNP7353
Indel310
 
 Vaccinium corymbosum : 191836
Marker TypeNumber of markers
SNP173654
SSR17367
Indel485
EST marker193
EST-SSR117
RAPD9
HRM8
CAPS3
 
 Vaccinium floribundum : 30
Marker TypeNumber of markers
SSR30
 
 Vaccinium macrocarpon : 14230
Marker TypeNumber of markers
SNP12747
SSR1377
EST-SSR95
SCAR10
PACE1
 
 Vaccinium myrtillus : 18
Marker TypeNumber of markers
gene marker17
SCAR1
 
 Vaccinium sp. : 19705
Marker TypeNumber of markers
SNP19588
SSR114
EST marker3
 
 Vaccinium spp. : 20490
Marker TypeNumber of markers
SSR15615
SNP4648
Indel213
gene marker14
 
 Phenotypes : 1381 phenotypic measurements , 30 trait descriptors
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Vaccinium acrobracteatum33
Vaccinium angustifolium1423
Vaccinium angustifolium x Vaccinium corymbosum44
Vaccinium arboreum77
Vaccinium arctostaphylos33
Vaccinium boreale1010
Vaccinium bracteatum1010
Vaccinium caesariense77
Vaccinium calycinum1017
Vaccinium cespitosum1013
Vaccinium consanguineum1010
Vaccinium cornigerum33
Vaccinium corymbosum23473
Vaccinium crassifolium45
Vaccinium cylindraceum1010
Vaccinium darrowii327
Vaccinium delavayi33
Vaccinium dependens33
Vaccinium elliottii1161
Vaccinium floribundum1010
Vaccinium formosum1313
Vaccinium fuscatum39
Vaccinium hirtum33
Vaccinium horizontale33
Vaccinium macrocarpon12214
Vaccinium membranaceum1114
Vaccinium meridionale1017
Vaccinium moupinense33
Vaccinium myrsinites33
Vaccinium myrtilloides1212
Vaccinium myrtillus321
Vaccinium myrtoides77
Vaccinium oldhamii1010
Vaccinium ovalifolium318
Vaccinium ovatum1455
Vaccinium oxycoccos39
Vaccinium padifolium1010
Vaccinium parvifolium1418
Vaccinium phillyreoides33
Vaccinium praestans36
Vaccinium reticulatum77
Vaccinium simulatum1017
Vaccinium smallii33
Vaccinium sp.1896
Vaccinium varingifolium33
Vaccinium virgatum1299
Vaccinium vitis-idaea26
 
 QTL/MTL : 4153 QTLs and 0 MTLs for 119 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
Abscission force: change160
Abscission force: ripe30
Acetyl-caffeoylquinic acid content60
Anthracnose fruit rot30
Berry calyx diameter970
Berry calyx lobe fold pattern840
Berry calyx lobe size1120
Berry picking scar10
Berry picking scar20
Berry solidity870
Berry tortuosity850
Berry UMCC - X-axis1010
Berry UMCC - Y-axis770
biennial bearing index460
Biennial bearing index based on sound fruit yield490
Biennial bearing index based on upright total berry weight330
Bloom on fruit820
Brix (soluble solids)680
Brix (soluble solids)100
Caffeoylarbutin content70
chilling requirement50
chilling requirement60
Chlorogenic acid content30
Chlorogenic acid content30
Citric acid content10
cold tolerance90
cold tolerance40
Cyanidin 3-(6-acetyl)galactoside content30
Cyanidin 3-(6-acetyl)glucoside content110
Cyanidin arabinoside content20
Cyanidin galactoside content120
Cyanidin glucoside content80
Delphinidin 3-(6-acetyl)galactoside content40
Delphinidin 3-(6-acetyl)glucoside content100
Delphinidin arabinoside content10
Delphinidin galactoside content70
Delphinidin glucoside content60
Early green fruit130
Epicuticular wax30
field fruit rot resistance30
Fruit color230
Fruit color intensity110
Fruit color intensity60
Fruit color variation150
Fruit diameter540
Fruit eccentricity1480
Fruit firmness20
Fruit firmness360
Fruit firmness retention50
Fruit flavor30
Fruit length1190
Fruit length:width ratio2250
fruit pH120
Fruit projected area320
Fruit rot incidence90
Fruit rot percent1150
Fruit shape: persistent homology380
Fruit size250
fruit weight170
fruit weight2240
Fruit width1020
Full bloom10
Malic acid content20
Malvidin 3-(6-acetyl)galactoside content50
Malvidin 3-(6-acetyl)glucoside content140
Malvidin arabinoside content90
Malvidin galactoside content130
Malvidin glucoside content90
Number of pedicels960
Number Pedicels with Aborted Berries970
Number Pedicels with Aborted Flowers860
Number Pedicels with Mature Berries820
Number Pedicels without Fruit400
Peonidin 3-(6-acetyl)galactoside content40
Peonidin 3-(6-acetyl)glucoside content80
Peonidin arabinoside content20
Peonidin galactoside content150
Peonidin glucoside content80
Percent acylated anthocyanins50
Percent acylated cyanidin60
Percent acylated delphinidin10
Percent acylated malvidin50
Percent arabinoside30
Percent cyanidin30
Percent cyanidin acetyl glucoside40
Percent cyanidin arabinoside100
Percent cyanidin galactoside60
Percent delphinidin acetyl glucoside20
Percent delphinidin arabinoside20
Percent delphinidin galactoside30
Percent delphinidin glucoside30
Percent galactoside30
Percent glucoside30
Percent malvidin acetyl galactoside40
Percent malvidin arabinoside30
Percent malvidin galactoside30
Percent peonidin galactoside90
Percent petunidin acetyl glucoside70
Percent petunidin galactoside30
Petunidin 3-(6-acetyl)galactoside content30
Petunidin 3-(6-acetyl)glucoside content170
Petunidin arabinoside content10
Petunidin galactoside content100
Petunidin glucoside content70
Proanthocyanidin content1150
Seed count1060
sound fruit yield1020
SS:TA ratio30
titratable acidity110
titratable acidity1350
Total 3-arabinoside content90
Total 3-galactoside content120
Total 3-glucoside content100
Total (6-acetyl)galactoside content40
Total (6-acetyl)glucoside content110
Total anthocyanin content70
Total anthocyanin content1090
Total delphinidin content20
total fruit yield870
Total malvidin content20
Total peonidin content20
Total petunidin content40
Upright dry weight of leaves520
Upright length920
Upright mean fruit weight850
Upright rebud820
Upright secondary growth length400
Upright total berry weight1230
Yield by area270
 
 Species : 51 species
GenusSpecies
Vacciniumacrobracteatum, angustifolium, angustifolium x Vaccinium corymbosum, arboreum, arctostaphylos, ashei, boreale, bracteatum, caesariense, calycinum, cespitosum, consanguineum, constablaei, cornigerum, corymbosum, crassifolium, cylindraceum, darrowii, delavayi, deliciosum, dependens, elliotti, elliottii, floribundum, formosum, fuscatum, hirtum, horizontale, macrocarpon, membranaceum, meridionale, moupinense, myrsinites, myrtilloides, myrtillus, myrtoides, oldhamii, ovalifolium, ovatum, oxycoccos, padifolium, parvifolium, phillyreoides, poasanum, praestans, reticulatum, simulatum, smallii, varingifolium, virgatum, vitis-idaea
 
 Transcripts
Analysis NameNumber of features
Vaccinium corymbosum GDV RefTrans V1Reference Transcriptomes : 39461