Data Overview

Genes : 1157 mRNAs

Source	Number of mRNAs
NCBI gene and mRNA sequences	1157

Genomes (2)

Source
Vaccinium corymbosum cv. Draper v1.0 genome sequence
Vaccinium corymbosum W8520 draft genome sequence

Germplasm : 386 germplasm

Vaccinium angustifolium : 7

Germplasm Type	Number of germplasm
cultivar	4
breeding_research_material	3

Vaccinium angustifolium x Vaccinium corymbosum : 2

Germplasm Type	Number of germplasm
cultivar	2

Vaccinium ashei : 1

Germplasm Type	Number of germplasm
breeding_research_material	1

Vaccinium constablaei : 1

Germplasm Type	Number of germplasm
breeding_research_material	1

Vaccinium corymbosum : 185

Germplasm Type	Number of germplasm
cultivar	100
breeding_research_material	59
population	13
wild_unimproved	13

Vaccinium darrowii : 8

Germplasm Type	Number of germplasm
breeding_research_material	4
cultivar	3
wild_unimproved	1

Vaccinium deliciosum : 1

Germplasm Type	Number of germplasm
wild_unimproved	1

Vaccinium elliotti : 1

Germplasm Type	Number of germplasm
cultivar	1

Vaccinium macrocarpon : 69

Germplasm Type	Number of germplasm
cultivar	28
breeding_research_material	22
population	14
wild_unimproved	5

Vaccinium myrtilloides : 1

Germplasm Type	Number of germplasm
wild_unimproved	1

Vaccinium myrtillus : 1

Germplasm Type	Number of germplasm
cultivar	1

Vaccinium ovatum : 5

Germplasm Type	Number of germplasm
breeding_research_material	4
cultivar	1

Vaccinium sp. : 37

Germplasm Type	Number of germplasm
cultivar	18
breeding_research_material	15
population	3
wild_unimproved	1

Vaccinium virgatum : 54

Germplasm Type	Number of germplasm
cultivar	37
breeding_research_material	17

Vaccinium vitis-idaea : 13

Germplasm Type	Number of germplasm
cultivar	9
breeding_research_material	4

Maps : 31 maps

Vaccinium corymbosum : 2

Map Type	Number of maps
genetic	2

Vaccinium macrocarpon : 23

Map Type	Number of maps
genetic	15
genomic	8

Vaccinium sp. : 6

Map Type	Number of maps
genetic	6

Markers : 89951 markers

Vaccinium ashei : 23213

Marker Type	Number of markers
SSR	15550
SNP	7353
Indel	310

Vaccinium corymbosum : 31894

Marker Type	Number of markers
SSR	17365
SNP	13723
Indel	485
EST marker	190
EST-SSR	111
RAPD	9
HRM	8
CAPS	3

Vaccinium macrocarpon : 14219

Marker Type	Number of markers
SNP	12739
SSR	1375
EST-SSR	95
SCAR	10

Vaccinium myrtillus : 18

Marker Type	Number of markers
gene marker	17
SCAR	1

Vaccinium sp. : 121

Marker Type	Number of markers
SSR	114
SNP	4
EST MARKER	3

Vaccinium spp. : 20486

Marker Type	Number of markers
SSR	15611
SNP	4648
Indel	213
GENE MARKER	14

Phenotypes : 928 phenotypic measurements , 18 trait descriptors

Species	Number of trait descriptors	Number of phenotypic measurements
Symphysia poasana	3	3
Vaccinium acrobracteatum	3	3
Vaccinium angustifolium	6	8
Vaccinium arboreum	1	1
Vaccinium arctostaphylos	3	3
Vaccinium boreale	3	3
Vaccinium bracteatum	3	3
Vaccinium caesariense	6	6
Vaccinium calycinum	3	3
Vaccinium cespitosum	3	6
Vaccinium consanguineum	3	3
Vaccinium cornigerum	3	3
Vaccinium corymbodendron	3	3
Vaccinium corymbosum	12	296
Vaccinium crassifolium	4	5
Vaccinium cylindraceum	3	3
Vaccinium darrowii	3	27
Vaccinium delavayi	3	3
Vaccinium dependens	3	3
Vaccinium elliottii	4	41
Vaccinium floribundum	3	3
Vaccinium formosum	5	5
Vaccinium fuscatum	3	12
Vaccinium hirtum	3	3
Vaccinium horizontale	3	3
Vaccinium macrocarpon	12	214
Vaccinium membranaceum	3	3
Vaccinium moupinense	3	3
Vaccinium myrsinites	3	6
Vaccinium myrtilloides	4	4
Vaccinium myrtillus	3	18
Vaccinium oldhamii	3	3
Vaccinium ovalifolium	4	19
Vaccinium ovatum	5	22
Vaccinium oxycoccos	3	9
Vaccinium padifolium	3	3
Vaccinium parvifolium	6	9
Vaccinium phillyreoides	3	3
Vaccinium praestans	3	6
Vaccinium reticulatum	3	3
Vaccinium simulatum	3	3
Vaccinium smallii	3	3
Vaccinium spp.	7	52
Vaccinium stamineum	1	1
Vaccinium varingifolium	3	3
Vaccinium virgatum	8	87
Vaccinium vitis-idaea	1	2

QTL/MTL : 403 QTLs and 0 MTLs for 22 agronomic traits

Trait Category	Number of QTLs	Number of MTLs
biennial bearing index	1	0
Brix (soluble solids)	13	0
chilling requirement	3	0
cold tolerance	2	0
field fruit rot resistance	3	0
Fruit color intensity	11	0
Fruit color variation	15	0
Fruit eccentricity	34	0
Fruit length	32	0
Fruit length:width ratio	35	0
Fruit projected area	32	0
Fruit rot incidence	9	0
Fruit rot percent	10	0
Fruit shape: persistent homology	38	0
fruit weight	39	0
Fruit width	35	0
Proanthocyanidin content	22	0
sound fruit yield	1	0
titratable acidity	19	0
Total anthocyanin content	18	0
total fruit yield	4	0
Yield by area	27	0

Species : 14 species

Genus	Species
Vaccinium	angustifolium, angustifolium x Vaccinium corymbosum, ashei, constablaei, corymbosum, darrowii, deliciosum, elliotti, macrocarpon, myrtilloides, myrtillus, ovatum, virgatum, vitis-idaea

Transcripts

Analysis Name	Number of features
Vaccinium corymbosum GDV RefTrans V1	Reference Transcriptomes : 39461