Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome
Genome Overview
Reference: Hirabayashi K, Debnath SC, Owens GL. Unveiling the evolutionary history of lingonberry (Vaccinium vitis-idaea L.) through genome sequencing and assembly of European and North American subspecies. G3 (Bethesda, Md.). 2023 Dec 24. Genome Assembly Summary:
Homology
Homology of the Vaccinium vitis-idaea cv. Red Candy genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2023-07), and UniProtKB/TrEMBL (Release 2023-07) databases. The best hit reports are available for download in Excel format. Protein Homologs
Assembly
Assembly: The Vaccinium vitis-idaea cv. Red Candy genome v1.0 assembly file is available in FASTA format. Downloads
Gene Prediction
Gene Prediction: The Vaccinium vitis-idaea cv. Red Candy genome v1.0 gene prediction files are available in FASTA and GFF3 formats. Downloads
Functional Analysis
Functional Analysis: Functional annotation files for the Vaccinium vitis-idaea cv. Red Candy genome v1.0 are available for download below. The Vaccinium vitis-idaea cv. Red Candy genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
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