Vaccinium corymbosum unigene v1

Overview
Analysis NameVaccinium corymbosum unigene v1
Methodcap3 (1.0)
SourceVaccinium corymbosum unigene v1
Date performed2011-01-18

An assembly of 5,267 EST sequences downloaded from NCBI dbEST using the cap3 assembly software (parameter: -p 90). 5,104 ESTs were used in the analysis after trimming using crossmatch against UniVec_Core (parameter: -minmatch 10 -penalty -2 -minscore 20 -screen) and filtering out RNA contamination using tblastx (parameter: -e 1e-6). Poly-A tail was also trimmed after RNA filtering. The assembly results in 748 contigs and 2,955 singlets.

 

Stats Number of Sequences Min Length Max Length Average Length
Unigene 3703 100 bp 2112 bp 585 bp
Contig 748 106 bp 2112 bp 755 bp
Singlet 2955 100 bp 1092 bp 542 bp

 

 

Properties
Additional information about this analysis:
Property NameValue
Analysis Typetripal_analysis_unigene
Homology
Homology for Vaccinium corymbosum unigene v1
Number (%) of Unigenes with a Match in Swiss-Prot Database
Download Excel Spreadsheet		 1,898 (51%)
Number (%) of Unigenes with a Match in TrEMBL Database
Download Excel Spreadsheet		 2,664 (72%)
Number (%) of Unigenes with a Match in TAIR (Arabidoposis) Database
Download Excel Spreadsheet		 2,490 (67%)
Number (%) of Unigenes with a Match in Poplar
Download Excel Spreadsheet		 2,591 (70%)
Number (%) of Unigenes with a Match in Peach
Download Excel Spreadsheet		 2,574 (70%)
Number (%) of Unigenes with a Match in Grape
Download Excel Spreadsheet		 2,579 (70%)