Mo028 | GDV

Marker Overview

Marker Overview


Name	Mo028
Genbank ID	N/A
Type	SSR
Species	Vaccinium floribundum
Repeat Motif	(AC)18
Primer 1	Mo028.Forward: TGCTTTCATCTATTGACCTTATCGG
Primer 2	Mo028.Reverse: GGGTGTCGTATCAGTAATCTCTCG
Publication	[view all]
Contact	Maria de Lourdes Torres

Contact

Name

Details

Maria de Lourdes Torres

First name:	Maria
Last name:	de Lourdes Torres
Institution:	Universidad San Francisco de Quito
Country:	Ecuador
Email:	ltorres@usfq.edu.ec
Last update:	Dec 2020

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr03	supercontig	Vcev1_p0.Chr03:27888831..27889254 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	GDV marker alignment to genome using primer sequences
scaffold00112	supercontig	scaffold00112:77440..77863 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
chr3_H1	supercontig	chr3_H1:24108042..24108467 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences
Vmac_chr04	supercontig	Vmac_chr04:15809545..15809966 .	Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence	GDV marker alignment to genome using primer sequences
chr4	supercontig	chr4:20903127..20903548 .	Vaccinium macrocarpon cv. Stevens v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr03	supercontig	Chr03:19638572..19639004 .	Vaccinium myrtillus isolate NK2018 v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr03_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr03_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:21086086..21086515 .	Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome	GDV marker alignment to genome using primer sequences
Chr03_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr03_Vaccinium_vitis-idaea_ssp_minus:23016209..23016640 .	Vaccinium vitis-idaea ssp. minus v1.0 genome	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2020	Vega-Polo P, Cobo MM, Argudo A, Gutierrez B, Rowntree J, Torres ML. Characterizing the genetic diversity of the Andean blueberry (Vaccinium floribundum Kunth.) across the Ecuadorian Highlands.. PloS one. 2020; 15(12):e0243420.