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Marker Overview
| Name | NCSU_Chr01_54520057 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | G/A |
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| 5' Flanking Sequence | CCCCATCACGTCAATCCCACGAGCCTCTTATCCATCTTACCCGGTTGACTATGAATCCCA
ATTCAATCCCACGTCCGTTCTTCTCCTAGAATGATATATT |
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| 3' Flanking Sequence | TGAAAATTAAACCACCATGTTGAAGGCAAGTTCTATTTTCTGTAATGTTTATTTCTACTT
CGTGCTAGGTAAGATCATGCAGCCCATTCACTGCAGAAGT |
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| Species | Vaccinium corymbosum |
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| Publication | [view all] |
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| Contact | Massimo Iorizzo
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Alignments
The following features are aligned
| Feature Name | Type | Location | Analysis | Reference |
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| VaccDscaff1 | supercontig | VaccDscaff1:42711405..42711405 . | Vaccinium corymbosum cv. Draper v1.0 genome sequence | Mengist MF, Bostan H, Young E, Kay KL, Gillitt N, Ballington J, Kay CD, Ferruzzi MG, Ashrafi H, Lila MA, Iorizzo M. High-density linkage map construction and identification of loci regulating fruit quality traits in blueberry.. Horticulture research. 2021 Aug 01; 8(1):169. |
| Vcev1_p0.Chr01 | supercontig | Vcev1_p0.Chr01:54520057..54520057 . | Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence | n/a |
Publications
| Year | Publication |
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| 2021 | Mengist MF, Bostan H, Young E, Kay KL, Gillitt N, Ballington J, Kay CD, Ferruzzi MG, Ashrafi H, Lila MA, Iorizzo M. High-density linkage map construction and identification of loci regulating fruit quality traits in blueberry.. Horticulture research. 2021 Aug 01; 8(1):169. |
| 2022 | Mengist MF, Bostan H, De Paola D, Teresi SJ, Platts AE, Cremona G, Xinpeng Q, Mackey T, Bassil NV, Ashrafi H, Giongo L, Jibran R, Chagné D, Bianco L, Lila MA, Rowland LJ, Iovene M, Edger PP, Iorizzo M. Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum).. The New Phytologist. 2022 Aug 13. |
Sequence
>NCSU_Chr01_54520057 ID=NCSU_Chr01_54520057; Name=NCSU_Chr01_54520057; organism=Vaccinium corymbosum; type=genetic_marker; length=201bp
CCCCATCACGTCAATCCCACGAGCCTCTTATCCATCTTACCCGGTTGACT
ATGAATCCCAATTCAATCCCACGTCCGTTCTTCTCCTAGAATGATATATT
RTGAAAATTAAACCACCATGTTGAAGGCAAGTTCTATTTTCTGTAATGTT
TATTTCTACTTCGTGCTAGGTAAGATCATGCAGCCCATTCACTGCAGAAG
T
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