NCSU_Chr01_54872984

Marker Overview


Name	NCSU_Chr01_54872984
dbSNP ID	N/A
Type	SNP
SNP Alleles	G/A
5' Flanking Sequence	AGGTACAAATTTCTGAAACTCGATCACCACAATTGATACTGAACTGACAACCTAACAAGC TTCTCAACAGCAATGTTCCAAACACAGATGTTCGTACACA
3' Flanking Sequence	ACTCCAAACATAGATTGTCGAGAACTATTCTTTGCACACTTCTCTCTTACAAAGGGAACG AGCTTCTTAATTGAAAGAGTAATGCTCCGGACACAGATGT
Species	Vaccinium corymbosum
Publication	[view all]
Contact	Massimo Iorizzo

Contact

Name

Details

Massimo Iorizzo

First name:	Massimo
Last name:	Iorizzo
Institution:	North Carolina State University
Address:	Kannapolis, NC, United States
Country:	United States
Email:	miorizz@ncsu.edu
Last update:	Aug 2021

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
VaccDscaff1	supercontig	VaccDscaff1:43154819..43154819 .	Vaccinium corymbosum cv. Draper v1.0 genome sequence	Mengist MF, Bostan H, Young E, Kay KL, Gillitt N, Ballington J, Kay CD, Ferruzzi MG, Ashrafi H, Lila MA, Iorizzo M. High-density linkage map construction and identification of loci regulating fruit quality traits in blueberry.. Horticulture research. 2021 Aug 01; 8(1):169.
Vcev1_p0.Chr01	supercontig	Vcev1_p0.Chr01:54872984..54872984 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	n/a

Publications


Year	Publication
2021	Mengist MF, Bostan H, Young E, Kay KL, Gillitt N, Ballington J, Kay CD, Ferruzzi MG, Ashrafi H, Lila MA, Iorizzo M. High-density linkage map construction and identification of loci regulating fruit quality traits in blueberry.. Horticulture research. 2021 Aug 01; 8(1):169.
2022	Mengist MF, Bostan H, De Paola D, Teresi SJ, Platts AE, Cremona G, Xinpeng Q, Mackey T, Bassil NV, Ashrafi H, Giongo L, Jibran R, Chagné D, Bianco L, Lila MA, Rowland LJ, Iovene M, Edger PP, Iorizzo M. Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum).. The New Phytologist. 2022 Aug 13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Blueberry-Reveille/Arlen-F1	LG01	N/A	99.05	Chr01_54872984	View
2	Blueberry-Reveille/Arlen-F1-2022	LG01	N/A	111.46	Chr01_54872984	View

Sequence

>NCSU_Chr01_54872984 ID=NCSU_Chr01_54872984; Name=NCSU_Chr01_54872984; organism=Vaccinium corymbosum; type=genetic_marker; length=201bp
AGGTACAAATTTCTGAAACTCGATCACCACAATTGATACTGAACTGACAA
CCTAACAAGCTTCTCAACAGCAATGTTCCAAACACAGATGTTCGTACACA
RACTCCAAACATAGATTGTCGAGAACTATTCTTTGCACACTTCTCTCTTA
CAAAGGGAACGAGCTTCTTAATTGAAAGAGTAATGCTCCGGACACAGATG
T