Proanthocyanidin content, qPAC.CNJ02-1.LG11.3 (QTL) Vaccinium macrocarpon

QTL Overview


QTL Label	qPAC.CNJ02-1.LG11.3
Published Symbol	pac_oct-11-cnj02
Trait Name	Proanthocyanidin content
Trait Alias	N/A
Trait Study	Cranberry-Fruit_anthocyanin-2018
Population	N/A
Female Parent	N/A
Male Parent	N/A
Colocalizing Marker	SCF120937
Neighboring Marker	N/A
Environment	N/A
LOD	3.29
Additivity Dominance Ratio	N/A
R2	0.04
Comments	N/A

Publications


Year	Publication
2018	Diaz-Garcia L, Schlautman B, Covarrubias-Pazaran G, Maule A, Johnson-Cicalese J, Grygleski E, Vorsa N, Zalapa J. Massive phenotyping of multiple cranberry populations reveals novel QTLs for fruit anthocyanin content and other important chemical traits. Molecular genetics and genomics : MGG. 2018 Jul 02.

Map Positions


#	Map Name	Linkage Group	Bin	Chromosome	Peak	Span Start	Span Stop	MapViewer
1	Cranberry-Composite_map-F1	LG11	N/A	N/A	53	-	-	View

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	supercontig	chr11:19061314..19061576 .
Vmac_chr11	supercontig	Vmac_chr11:20497623..20497899 .

Sequences

The following sequences are available for this feature:

QTL from alignment at chr11:19061314..19061576
QTL from alignment at Vmac_chr11:20497623..20497899

QTL from alignment at chr11:19061314..19061576

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qPAC.CNJ02-1.LG11.3 ID=qPAC.CNJ02-1.LG11.3; Name=Proanthocyanidin content; organism=Vaccinium macrocarpon; type=QTL; length=263bp; location=Sequence derived from: chr11:19061314..19061576 (Vaccinium macrocarpon
TGTGCAAGAGTCATCTCCTATTGAAACTTGTGATAATAGCAACTCCCAAA
ACTCGTCGAAGCGAAGCTGTAATGACTTGGAATTGTTGTTTTTTGGTGGC
ATTGTTGTATTAATAGAATATTTATATTTTATTGTATTTTGTTTATGTAA
AGTTATGATTTCTTGAGGACTCTTCTTAACTTCTTGGGTCCACCTGCACA
AGATAGAGAGAGAGAGAGAGAGAGAGAGAAGCACACGGAGAAGAAGGAGA
ATGAAAGGGAATA

QTL from alignment at Vmac_chr11:20497623..20497899

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qPAC.CNJ02-1.LG11.3 ID=qPAC.CNJ02-1.LG11.3; Name=Proanthocyanidin content; organism=Vaccinium macrocarpon; type=QTL; length=277bp; location=Sequence derived from: Vmac_chr11:20497623..20497899 (Vaccinium macrocarpon
TGTGCAAGAGTCATCTCCTATTGAAACTTGTGATAATAGCAACTCCCAAA
ACTCGTCGAAGCGAAGCTGTAATGACTTGGAATTGTTGTTTTTTGGTGGC
ATTGTTGTATTAATAGAATATTTATATTTTATTGTATTTTGTTTATGTAA
AGTTATGATTTCTTGAGGACTCTTCTTAACTTCTTGGGTCCACCTGCACA
AGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCACAC
GGAGAAGAAGGAGAATGAAAGGGAATA