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Contig Overview
Name | Vaccinium_corymbosum_v1_Contig11 |
Unique Name | Vaccinium_corymbosum_v1_Contig11 |
Type | contig |
Organism | Vaccinium corymbosum (northern highbush blueberry) |
Sequence length | 921 |
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
EG026119 | EST | EG026119:1..921 + |
EG026053 | EST | EG026053:1..921 + |
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | SEG | seg | seg | coord: 6..13 score: NAcoord: 17..39 score |
None | No IPR available | SEG | seg | seg | coord: 4..21 score: NAcoord: 30..37 score: NAcoord: 76..88 score |
None | No IPR available | SEG | seg | seg | coord: 21..32 score |
None | No IPR available | SEG | seg | seg | coord: 31..48 score |
None | No IPR available | SEG | seg | seg | coord: 6..21 score |
None | No IPR available | SEG | seg | seg | coord: 43..58 score |
None | No IPR available | SEG | seg | seg | coord: 17..28 score |
None | No IPR available | SEG | seg | seg | coord: 32..43 score |
Sequences
The
following sequences are available for this feature:
contig sequence >Vaccinium_corymbosum_v1_Contig11 ID=Vaccinium_corymbosum_v1_Contig11; Name=Vaccinium_corymbosum_v1_Contig11; organism=Vaccinium corymbosum; type=contig; length=921bp GATCATTTNTATACTTCTCTCTTACATTCTTTATTATNATTTGTGTCGAT CCTTATTTGTTTACCTCTATGTCAATTGTTGTTATCTCACACACTCTTGA TCACTNTGCTTTGTCTTCCTCTATTTATTTGCACTGTTCTGTTGTCTCTT GTCTATCACTGAGTGTTCCATGTNGTTTCACCCTGTTCACTTACTTCTGT CTGTGTTACATCAACTTGCACACTAATCTCATTCCCCCATATCTTTGTAT GTACTCTNTGTACTCTGTTGTTATCCTATTGNACCATTTACCCTGTTTCA ATTGTTTCCTGCTTCCCTCCATGTCCTTCTCGTTCTAACATTGCTTCCAT CAGTTTTGACAGTCACTNTTGCACACTAATNTGCTTTACACCTCCTTCCC CAAACCCAACCTTNTACCCCACCTATATCTAACAGCCTTTTCTTTTTCGC CTTATAATATTTTGTACCAGTTCATCCTATATATTCCCGTTAGTGTTACA TATCTACTCCGTTTTAACTTTATTACAAACGCCCCACCTTCCAAAACATT GCCCCATTTAACATTAGGCTAACACTCCCCCCTCCGATTCACCCGTTTTA AAATTTGGCACCCTATCTCTANTTATTCCTGTTGTGTAATTCTTTCTTTT TTTACCTTTTTTTAAACCCTACCTTCATTGCAATTTTCCCTTTGGCTTCC GTTAAATCTCGGCTTTCCATTTTTTTTTGTGTCAAACTCTTTTTGCTTCA AGACCCTNCCATATAACAACAGGNTTCTTTTTCATNAAGGGGCCAACCTT TGCTTTGGTTTCCCCGTTCCCAGTCAATTGCCCCAGCTTTTTGGAACATT TTTGGTTTTGGGGGTTAATTTCGCAAAATTTCCGCAAGCTTTTTCAGGGG TTTAAATAAATTAANNGGGAA back to top
Annotated Terms
The
following terms have been associated with
this contig:
Vocabulary: INTERPRO
Term | Definition |
noIPR | unintegrated |
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