Vaccinium_corymbosum_v1_Contig162

Contig Overview


Name	Vaccinium_corymbosum_v1_Contig162
Unique Name	Vaccinium_corymbosum_v1_Contig162
Type	contig
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	571

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CF810592	EST	CF810592:29..343 +	Vaccinium corymbosum unigene v1	n/a
CV189888	EST	CV189888:1..500 +	Vaccinium corymbosum unigene v1	n/a
CV091137	EST	CV091137:3..571 +	Vaccinium corymbosum unigene v1	n/a
CF810567	EST	CF810567:29..551 +	Vaccinium corymbosum unigene v1	n/a
CF810565	EST	CF810565:29..551 +	Vaccinium corymbosum unigene v1	n/a
CF810573	EST	CF810573:29..549 +	Vaccinium corymbosum unigene v1	n/a
CF810568	EST	CF810568:29..549 +	Vaccinium corymbosum unigene v1	n/a
CV091126	EST	CV091126:3..571 +	Vaccinium corymbosum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
CF810592	CF810592	Vaccinium corymbosum	EST
CV189888	CV189888	Vaccinium corymbosum	EST
CV091137	CV091137	Vaccinium corymbosum	EST
CF810567	CF810567	Vaccinium corymbosum	EST
CF810565	CF810565	Vaccinium corymbosum	EST
CF810573	CF810573	Vaccinium corymbosum	EST
CF810568	CF810568	Vaccinium corymbosum	EST
CV091126	CV091126	Vaccinium corymbosum	EST

Homology

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.397e-35
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASC ICQENFS TV ALTEPIDIYSEWIDECERVNN+EDD
Sbjct:   16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.200e-30
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            MDKLDT+FSCPFCNHGSSVEC IDMK+LIG+A+C IC+E+FS T+TALTE IDIYSEWIDECERVN  EDD
Sbjct:   16 MDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.312e-15
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNN 302
            + KLDT F+C FCNH  SV C +D KN IG  SC IC ++F   + +L++P+D+YS+W D  E VN+
Sbjct:   16 VQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.922e-15
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 3

Query:  111 LDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNN 302
            LDT F+CPFCNH    E ++D +  +G  SC +C E+F   +  L+EPID+YS+W+D CE+ NN
Sbjct:   20 LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.511e-14
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 3

Query:  111 LDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNN 302
            LDT F+C FCNH  SV C +D ++ +G   C IC ++    +TAL+ PID+YS+WID C+ V N
Sbjct:   19 LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVAN 82

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.400e-14
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3

Query:  111 LDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVN 299
            L+T F+CPFCNH  S + ++D     G  SC +C E F   +T L+EP+D+YS+WID CE  N
Sbjct:   20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.400e-14
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3

Query:  111 LDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVN 299
            L+T F+CPFCNH  S + ++D     G  SC +C E F   +T L+EP+D+YS+WID CE  N
Sbjct:   20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.400e-14
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3

Query:  111 LDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVN 299
            L+T F+CPFCNH  S + ++D     G  SC +C E F   +T L+EP+D+YS+WID CE  N
Sbjct:   20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_MANSE (Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVN 299
            ++ LD  F+CPFCNH  S E ++D         C +C E+F  T   L+EPID+Y++W+D CE  N
Sbjct:   17 IEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Match: ELOF1_DROME (Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVN 299
            ++ LD  F+CPFCNH  S E ++D      + +C +C E+F   +  L+EPID+Y++W+D CE  N
Sbjct:   17 IEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s38240.1 ()

HSP 1 Score: 94.7449 bits (234), Expect = 4.025e-20
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVT 239
            MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQENFSMT+T
Sbjct:   16 MDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQENFSMTIT 61

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0011s09960.1 ()

HSP 1 Score: 93.5893 bits (231), Expect = 8.966e-20
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTAL 245
            MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSMT+T +
Sbjct:   16 MDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQESFSMTITGI 63

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0174s00250.1 ()

HSP 1 Score: 93.5893 bits (231), Expect = 8.966e-20
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTAL 245
            MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSMT+T +
Sbjct:   16 MDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQESFSMTITGI 63

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0012s11510.1 ()

HSP 1 Score: 90.8929 bits (224), Expect = 5.811e-19
Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 3

Query:  108 KLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVN 299
            KLDTVF CPFC H +SV C  +    IGE SC IC   +   +T LTEPIDIYSEWIDECERVN
Sbjct:   19 KLDTVFPCPFCQHETSVGCSFNKDLNIGEISCSICHAGYETKLTPLTEPIDIYSEWIDECERVN 82

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0646s00200.1 ()

HSP 1 Score: 86.6557 bits (213), Expect = 1.096e-17
Identity = 40/64 (62.50%), Postives = 43/64 (67.19%), Query Frame = 3

Query:  108 KLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVN 299
            KLDTVF CPFC   +SV C  D    IGE SC IC   +   +T LTEPIDIY EWIDECERVN
Sbjct:   18 KLDTVFRCPFCQLENSVGCSFDKDLNIGEISCSICHAGYETKLTPLTEPIDIYCEWIDECERVN 81

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0014s05530.1 ()

HSP 1 Score: 86.6557 bits (213), Expect = 1.096e-17
Identity = 40/64 (62.50%), Postives = 43/64 (67.19%), Query Frame = 3

Query:  108 KLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVN 299
            KLDTVF CPFC   +SV C  D    IGE SC IC   +   +T LTEPIDIY EWIDECERVN
Sbjct:   18 KLDTVFRCPFCQLENSVGCSFDKDLNIGEISCSICHAGYETKLTPLTEPIDIYCEWIDECERVN 81

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0646s00220.1 ()

HSP 1 Score: 82.8037 bits (203), Expect = 1.583e-16
Identity = 38/62 (61.29%), Postives = 41/62 (66.13%), Query Frame = 3

Query:  108 KLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECER 293
            KLDTVF CPFC   +SV C  D    IGE SC IC   +   +T LTEPIDIY EWIDECER
Sbjct:   18 KLDTVFRCPFCQLENSVGCSFDKDLNIGEISCSICHAGYETKLTPLTEPIDIYCEWIDECER 79

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
Match: ppa014035m ()

HSP 1 Score: 144.821 bits (364), Expect = 2.406e-35
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDG 317
            MDKLDTVFSCPFC+HG+SVECRIDMKNLIGEASC ICQE+FS T+TAL+EPID+YSEWIDECERVNNLEDDG
Sbjct:   16 MDKLDTVFSCPFCSHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEPIDVYSEWIDECERVNNLEDDG 87

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
Match: ppa014078m ()

HSP 1 Score: 144.05 bits (362), Expect = 4.104e-35
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA 320
            MDKLDTVF CPFCNHGSSVECRIDMKNLIGEA C ICQENFS T+TALTEPID+YSEWIDECERVN ++DDGA
Sbjct:   16 MDKLDTVFCCPFCNHGSSVECRIDMKNLIGEAICSICQENFSTTITALTEPIDVYSEWIDECERVNTVDDDGA 88

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
Match: ppa014081m ()

HSP 1 Score: 144.05 bits (362), Expect = 4.104e-35
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA 320
            MDKLDTVF CPFCNHGSSVECRIDMKNLIGEA C ICQENFS T+TALTEPID+YSEWIDECERVN ++DDGA
Sbjct:   16 MDKLDTVFCCPFCNHGSSVECRIDMKNLIGEAICSICQENFSTTITALTEPIDVYSEWIDECERVNTVDDDGA 88

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
Match: ppa023195m ()

HSP 1 Score: 127.102 bits (318), Expect = 5.192e-30
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            MDKLDT F CPFCNHGSSVEC IDMKN+IGEA C +CQE++S T+TALTEPID+YSEWIDECERVN +  D
Sbjct:   16 MDKLDTAFCCPFCNHGSSVECDIDMKNMIGEALCSVCQESYSTTITALTEPIDVYSEWIDECERVNTIIAD 86

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
Match: ppa021677m ()

HSP 1 Score: 126.716 bits (317), Expect = 6.781e-30
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 3

Query:  105 DKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            +KLDTVF CPFCNHGSSVEC IDMKN+IGEA C ICQE+FS T+TALTEPID+YSEWIDECERVN +  D
Sbjct:   19 EKLDTVFCCPFCNHGSSVECDIDMKNMIGEALCSICQESFSTTITALTEPIDVYSEWIDECERVNTIVFD 88

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
Match: ppa021271m ()

HSP 1 Score: 123.635 bits (309), Expect = 5.740e-29
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 3

Query:  105 DKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            +KLDTVF CPFCNHGSS+EC IDMKN+IGEA C +CQE++S T+TALTEPID+YSEWID+CERVN ++ +
Sbjct:    4 EKLDTVFCCPFCNHGSSIECDIDMKNMIGEAFCSVCQESYSTTITALTEPIDVYSEWIDKCERVNTIKKE 73

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
Match: ppa024685m ()

HSP 1 Score: 92.4337 bits (228), Expect = 1.417e-19
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNL 305
            M+KLDT F CPFCNHGSS             A C +CQE+FS T+T LTEPID+YSEWIDECERVN +
Sbjct:   17 MEKLDTAFCCPFCNHGSS-------------ALCSVCQESFSTTITPLTEPIDVYSEWIDECERVNTI 71

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: D7TJF8|D7TJF8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021139001 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.046e-35
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 3

Query:   27 YSGKDLS*LQMGXXXXXXXXXXXXXMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA*KGSSN 338
            ++ KDLS   MG             MDKLDTVFSCPFCNHG+ VECRIDMKNLIGEASC ICQE+FS TVTALTEPIDIYSEWIDECERVNNLEDDG  +G ++
Sbjct:   26 FAEKDLS--YMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFSTTVTALTEPIDIYSEWIDECERVNNLEDDGHLEGRAD 127

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: B9I1E0|B9I1E0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568625 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.046e-35
Identity = 71/90 (78.89%), Postives = 75/90 (83.33%), Query Frame = 3

Query:   51 LQMGXXXXXXXXXXXXXMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA 320
            LQMG             MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSMT+TALTEPIDIYSEWIDECERVN+LEDDGA
Sbjct:   68 LQMGKRKSTAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQESFSMTITALTEPIDIYSEWIDECERVNSLEDDGA 157

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: B9GGE4|B9GGE4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_829900 PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.543e-34
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA 320
            MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQENFSMT+TALTEPIDIYSEWIDECERVN+LEDDGA
Sbjct:   16 MDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQENFSMTITALTEPIDIYSEWIDECERVNSLEDDGA 88

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: A9PJX4|A9PJX4_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.863e-34
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA 320
            MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSMT+TALTEPIDIYSEWIDECERVN+LEDDGA
Sbjct:   16 MDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQESFSMTITALTEPIDIYSEWIDECERVNSLEDDGA 88

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: A9P8R4|A9P8R4_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.863e-34
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA 320
            MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSMT+TALTEPIDIYSEWIDECERVN+LEDDGA
Sbjct:   16 MDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQESFSMTITALTEPIDIYSEWIDECERVNSLEDDGA 88

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: Q0D4E9|Q0D4E9_ORYSJ (Os07g0631100 protein OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.000e-33
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASC ICQENFS TV ALTEPIDIYSEWIDECERVNN+EDD
Sbjct:   16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: A2X2X2|A2X2X2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06540 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.000e-33
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASC ICQENFS TV ALTEPIDIYSEWIDECERVNN+EDD
Sbjct:   16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: B9S937|B9S937_RICCO (Transcription elongation factor, putative OS=Ricinus communis GN=RCOM_1012190 PE=4 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.910e-33
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA 320
            MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FS T+TALTEPID+YSEWIDECERVNN++DDGA
Sbjct:   16 MDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCAICQESFSTTITALTEPIDVYSEWIDECERVNNVDDDGA 88

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: C5Z4C0|C5Z4C0_SORBI (Putative uncharacterized protein Sb10g003710 OS=Sorghum bicolor GN=Sb10g003710 PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.217e-32
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASC ICQENFS TV ALTEPIDIYSEWIDECERVN +E D
Sbjct:   16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNTVEGD 86

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Match: B6U0N8|B6U0N8_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.217e-32
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASC ICQENFS TV ALTEPIDIYSEWIDECERVN +E D
Sbjct:   16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSXTVNALTEPIDIYSEWIDECERVNTVEGD 86

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Vitis vinifera peptide
Match: GSVIVT01021139001 (assembled CDS)

HSP 1 Score: 150.214 bits (378), Expect = 4.907e-37
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 3

Query:   27 YSGKDLS*LQMGXXXXXXXXXXXXXMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA*KGSSN 338
            ++ KDLS   MG             MDKLDTVFSCPFCNHG+ VECRIDMKNLIGEASC ICQE+FS TVTALTEPIDIYSEWIDECERVNNLEDDG  +G ++
Sbjct:   26 FAEKDLS--YMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFSTTVTALTEPIDIYSEWIDECERVNNLEDDGHLEGRAD 127

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Vitis vinifera peptide
Match: GSVIVT01014257001 (assembled CDS)

HSP 1 Score: 139.428 bits (350), Expect = 8.662e-34
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDDGA 320
            MDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSMTV AL+EPID+YSEWIDECERVN L++D A
Sbjct:   16 MDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSMTVNALSEPIDVYSEWIDECERVNTLDEDAA 88

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TAIR peptide
Match: AT5G46030.1 (| Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18670531-18671138 FORWARD LENGTH=120)

HSP 1 Score: 130.954 bits (328), Expect = 4.406e-31
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 3

Query:  102 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCMICQENFSMTVTALTEPIDIYSEWIDECERVNNLEDD 314
            MDKLDT+FSCPFCNHGSSVEC IDMK+LIG+A+C IC+E+FS T+TALTE IDIYSEWIDECERVN  EDD
Sbjct:   16 MDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Vitis vinifera peptide
BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TAIR peptide

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
ELOF1_ORYSJ	7.397e-35	94.37	Transcription elongation factor 1 homolog OS=Oryza...	[more]
ELOF1_ARATH	4.200e-30	81.69	Transcription elongation factor 1 homolog OS=Arabi...	[more]
ELF1_YEAST	1.312e-15	49.25	Transcription elongation factor 1 OS=Saccharomyces...	[more]
ELOF1_CAEEL	2.922e-15	48.44	Transcription elongation factor 1 homolog OS=Caeno...	[more]
ELOF1_SCHPO	5.511e-14	48.44	Transcription elongation factor 1 homolog OS=Schiz...	[more]
ELOF1_MOUSE	9.400e-14	47.62	Transcription elongation factor 1 homolog OS=Mus m...	[more]
ELOF1_HUMAN	9.400e-14	47.62	Transcription elongation factor 1 homolog OS=Homo ...	[more]
ELOF1_BOVIN	9.400e-14	47.62	Transcription elongation factor 1 homolog OS=Bos t...	[more]
ELOF1_MANSE	1.357e-12	42.42	Transcription elongation factor 1 homolog OS=Mandu...	[more]
ELOF1_DROME	1.357e-12	40.91	Transcription elongation factor 1 homolog OS=Droso...	[more]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 7


Match Name	E-value	Identity
POPTR_0001s38240.1	4.025e-20	91.30	[more]
POPTR_0011s09960.1	8.966e-20	85.42	[more]
POPTR_0174s00250.1	8.966e-20	85.42	[more]
POPTR_0012s11510.1	5.811e-19	64.06	[more]
POPTR_0646s00200.1	1.096e-17	62.50	[more]
POPTR_0014s05530.1	1.096e-17	62.50	[more]
POPTR_0646s00220.1	1.583e-16	61.29	[more]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 7


Match Name	E-value	Identity
ppa014035m	2.406e-35	88.89	[more]
ppa014078m	4.104e-35	87.67	[more]
ppa014081m	4.104e-35	87.67	[more]
ppa023195m	5.192e-30	77.46	[more]
ppa021677m	6.781e-30	80.00	[more]
ppa021271m	5.740e-29	72.86	[more]
ppa024685m	1.417e-19	61.76	[more]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
D7TJF8\|D7TJF8_VITVI	9.046e-35	71.15	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9I1E0\|B9I1E0_POPTR	9.046e-35	78.89	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GGE4\|B9GGE4_POPTR	1.543e-34	93.15	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PJX4\|A9PJX4_9ROSI	5.863e-34	91.78	Putative uncharacterized protein OS=Populus tricho...	[more]
A9P8R4\|A9P8R4_POPTR	5.863e-34	91.78	Putative uncharacterized protein OS=Populus tricho...	[more]
Q0D4E9\|Q0D4E9_ORYSJ	1.000e-33	94.37	Os07g0631100 protein OS=Oryza sativa subsp. japoni...	[more]
A2X2X2\|A2X2X2_ORYSI	1.000e-33	94.37	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B9S937\|B9S937_RICCO	2.910e-33	87.67	Transcription elongation factor, putative OS=Ricin...	[more]
C5Z4C0\|C5Z4C0_SORBI	3.217e-32	91.55	Putative uncharacterized protein Sb10g003710 OS=So...	[more]
B6U0N8\|B6U0N8_MAIZE	3.217e-32	91.55	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 2


Match Name	E-value	Identity	Description
GSVIVT01021139001	4.907e-37	71.15	assembled CDS	[more]
GSVIVT01014257001	8.662e-34	84.93	assembled CDS	[more]

BLAST of Vaccinium_corymbosum_v1_Contig162 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G46030.1	4.406e-31	81.69	\| Symbols: \| unknown protein; CONTAINS InterPro D...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Protein of unknown function DUF701, zinc-binding putative	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 4..88 score: 1.2
IPR007808	Protein of unknown function DUF701, zinc-binding putative	PFAM	PF05129	Elf1	coord: 4..83 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 5..17 score
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 3..83 score: 1.9
None	No IPR available	SEG	seg	seg	coord: 3..18 score: NAcoord: 74..86 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Vaccinium_corymbosum_v1_Contig162 ID=Vaccinium_corymbosum_v1_Contig162; Name=Vaccinium_corymbosum_v1_Contig162; organism=Vaccinium corymbosum; type=contig; length=571bp
GGCTTTTCAAGTTGGGAACTNGAGAATATTCAGGAAAAGACTTGAGTTGA
CTACAGATGGGTAAAAGGAAGTCAAAGGCGAAGCCACCCCCGAAGAAGAG
AATGGATAAGCTTGATACTGTTTTCAGTTGCCCCTTCTGTAACCATGGGA
GCAGTGTGGAATGCCGCATTGATATGAAGAACTTGATTGGTGAAGCTTCA
TGCATGATTTGCCAAGAGAACTTTAGCATGACTGTGACAGCTTTAACTGA
ACCTATAGACATATATAGTGAATGGATCGATGAATGTGAACGGGTCAACA
ACCTTGAAGATGACGGTGCTTAGAAGGGTAGTTCAAACCTTCAGATGTTC
TTGTTGGGGAAAAATAAAGATACGAGATGTTGTTCTTTAAGGCAGGCTTT
GATGTATATAGATGGTTCAAACTGTTTGCTAGGCTTGTATCCGTAACTAT
TTCGCCATCTTATAGATATGGTATGTGGTGTACTAAACTTAATGTTGCTT
TCCCAGGTGTTTGTATTTGAAGAGCAGTATTATATATTACCTTCTTGGCA
ATGATATAAACATTTAGTAGT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR007808	Elf1
noIPR	unintegrated