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Contig Overview
Name | Vaccinium_corymbosum_v1_Contig20 |
Unique Name | Vaccinium_corymbosum_v1_Contig20 |
Type | contig |
Organism | Vaccinium corymbosum (northern highbush blueberry) |
Sequence length | 464 |
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
EG026090 | EST | EG026090:1..464 + |
DW042996 | EST | DW042996:1..464 + |
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | SEG | seg | seg | coord: 38..57 score: NAcoord: 66..83 score: NAcoord: 88..98 score |
None | No IPR available | SEG | seg | seg | coord: 56..69 score: NAcoord: 77..89 score |
None | No IPR available | SEG | seg | seg | coord: 4..16 score: NAcoord: 20..39 score |
None | No IPR available | SEG | seg | seg | coord: 27..50 score |
None | No IPR available | SEG | seg | seg | coord: 8..33 score |
None | No IPR available | SEG | seg | seg | coord: 11..30 score |
None | No IPR available | SEG | seg | seg | coord: 13..22 score: NAcoord: 35..45 score: NAcoord: 50..67 score: NAcoord: 76..95 score |
None | No IPR available | SEG | seg | seg | coord: 11..20 score: NAcoord: 31..68 score: NAcoord: 76..89 score |
Sequences
The
following sequences are available for this feature:
contig sequence >Vaccinium_corymbosum_v1_Contig20 ID=Vaccinium_corymbosum_v1_Contig20; Name=Vaccinium_corymbosum_v1_Contig20; organism=Vaccinium corymbosum; type=contig; length=464bp TTGCCTTTTAATTTTCGTTGAAAATTCTGCTGATGGCTATTTGCCTTTAT TTTGCATAGCCTTTATAAGGCCGCATTGACAAAATTGAGGTGGGGGAGAA AAANACTTCCCCGGGGCCCTTGGAAAGAATTTCCCCCCCGCGGCCGCCGG CCCTGTGGGGAGAAAGGGGAGAATATTCCCCTTTTTTCCCCCCCCACAGG GCCCCCCCGCCGGGGGGCCCCGCTTTCNCCCCCGCCGGGAAAAATAACAC GCCAGGAATTTCTCCCCCTAAAGTGGCCCCCCCTCCCATATACCCCCCCT TTTTTTTCCTTTTTNTAGAAAGAAAAAGGGGGGCCGGGGGGGGCGCTGGG GGGGGTTGTGGGAGGGAGAAAAAATTTTTCCCCGAAGAAAAAACTATTTT TTCCCTCTTTTTCTNGCGGGGTTTTTTTTGTGGGAAAATATATTTGGGGG GCGCGCCACAGGGG back to top
Annotated Terms
The
following terms have been associated with
this contig:
Vocabulary: INTERPRO
Term | Definition |
noIPR | unintegrated |
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