Vaccinium_corymbosum_v1_Contig239

Contig Overview


Name	Vaccinium_corymbosum_v1_Contig239
Unique Name	Vaccinium_corymbosum_v1_Contig239
Type	contig
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	806

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
DR067261	EST	DR067261:1..224 +	Vaccinium corymbosum unigene v1	n/a
CV090706	EST	CV090706:66..806 +	Vaccinium corymbosum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
DR067261	DR067261	Vaccinium corymbosum	EST
CV090706	CV090706	Vaccinium corymbosum	EST

Homology

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0010s24290.1 ()

HSP 1 Score: 59.3066 bits (142), Expect = 3.289e-9
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0008s02430.1 ()

HSP 1 Score: 57.7658 bits (138), Expect = 9.570e-9
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC GCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCGGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. P. persica 1.0 peptide
Match: ppa014090m ()

HSP 1 Score: 55.8398 bits (133), Expect = 2.585e-8
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1

Query:   64 SQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            SQT VLKVGMSCQGCVGAVKRVLGK++G+
Sbjct:    3 SQTTVLKVGMSCQGCVGAVKRVLGKLEGV 31

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. P. persica 1.0 peptide
Match: ppa022012m ()

HSP 1 Score: 50.8322 bits (120), Expect = 8.314e-7
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 1

Query:   70 TVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            T V KVGMSCQGCVGAVKRVLGK++G+
Sbjct:   27 TTVFKVGMSCQGCVGAVKRVLGKLEGV 53

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: A1ECK4|A1ECK4_9ROSI (Putative copper chaperone OS=Citrus hybrid cultivar PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.550e-7
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGKMDG+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKMDGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: D3GC04|D3GC04_9ROSI (Copper chaperone OS=Jatropha curcas GN=CCH PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.025e-7
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSCQGCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCQGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: C6SZA3|C6SZA3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.453e-7
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGK+DG+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKLDGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: Q84KJ2|Q84KJ2_SOLLC (Copper chaperone OS=Solanum lycopersicum GN=LeCCH PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.510e-7
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: Q6J338|Q6J338_9ROSI (Copper chaperone OS=Populus alba x Populus tremula var. glandulosa GN=CCH PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.510e-7
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: D4P094|D4P094_HEVBR (Copper transport protein ATOX1 OS=Hevea brasiliensis GN=CCH PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.510e-7
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: B2CM19|B2CM19_SOLCH (Copper chaperone OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.510e-7
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: A9PIL5|A9PIL5_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.510e-7
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Match: A9PCL8|A9PCL8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.510e-7
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            MSQTVVLKVGMSC+GCVGAVKRVLGKM+G+
Sbjct:    1 MSQTVVLKVGMSCEGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. Vitis vinifera peptide
Match: GSVIVT01034760001 (assembled CDS)

HSP 1 Score: 58.151 bits (139), Expect = 4.437e-9
Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            M+QTVVLKVGMSC+GCVGAVKRVLGKM+G+
Sbjct:    1 MAQTVVLKVGMSCEGCVGAVKRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TAIR peptide
Match: AT3G56240.1 (| Symbols: CCH | copper chaperone | chr3:20863460-20864402 REVERSE LENGTH=121)

HSP 1 Score: 57.3806 bits (137), Expect = 1.099e-8
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1

Query:   61 MSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            M+QTVVLKVGMSCQGCVGAV RVLGKM+G+
Sbjct:    1 MAQTVVLKVGMSCQGCVGAVNRVLGKMEGV 30

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TAIR peptide
Match: AT1G66240.1 (| Symbols: ATX1, ATATX1 | homolog of anti-oxidant 1 | chr1:24686445-24687327 REVERSE LENGTH=106)

HSP 1 Score: 56.225 bits (134), Expect = 2.448e-8
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 1

Query:   58 AMSQTVVLKVGMSCQGCVGAVKRVLGKMDGL 150
            AMSQTVVL+V M+C+GCVGAVKRVLGKM+G+
Sbjct:   30 AMSQTVVLRVAMTCEGCVGAVKRVLGKMEGV 60

The following BLAST results are available for this feature:

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. Populus trichocarpa peptide v2.0
BLAST of Vaccinium_corymbosum_v1_Contig239 vs. P. persica 1.0 peptide
BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
BLAST of Vaccinium_corymbosum_v1_Contig239 vs. Vitis vinifera peptide
BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TAIR peptide

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
POPTR_0010s24290.1	3.289e-9	90.00		[more]
POPTR_0008s02430.1	9.570e-9	90.00		[more]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
ppa014090m	2.585e-8	86.21		[more]
ppa022012m	8.314e-7	81.48		[more]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 9


Match Name	E-value	Identity	Description
A1ECK4\|A1ECK4_9ROSI	1.550e-7	93.33	Putative copper chaperone OS=Citrus hybrid cultiva...	[more]
D3GC04\|D3GC04_9ROSI	2.025e-7	93.33	Copper chaperone OS=Jatropha curcas GN=CCH PE=4 SV...	[more]
C6SZA3\|C6SZA3_SOYBN	3.453e-7	90.00	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q84KJ2\|Q84KJ2_SOLLC	4.510e-7	90.00	Copper chaperone OS=Solanum lycopersicum GN=LeCCH ...	[more]
Q6J338\|Q6J338_9ROSI	4.510e-7	90.00	Copper chaperone OS=Populus alba x Populus tremula...	[more]
D4P094\|D4P094_HEVBR	4.510e-7	90.00	Copper transport protein ATOX1 OS=Hevea brasiliens...	[more]
B2CM19\|B2CM19_SOLCH	4.510e-7	90.00	Copper chaperone OS=Solanum chacoense PE=4 SV=1	[more]
A9PIL5\|A9PIL5_9ROSI	4.510e-7	90.00	Putative uncharacterized protein OS=Populus tricho...	[more]
A9PCL8\|A9PCL8_POPTR	4.510e-7	90.00	Putative uncharacterized protein OS=Populus tricho...	[more]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01034760001	4.437e-9	86.67	assembled CDS	[more]

BLAST of Vaccinium_corymbosum_v1_Contig239 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G56240.1	1.099e-8	86.67	\| Symbols: CCH \| copper chaperone \| chr3:20863460-...	[more]
AT1G66240.1	2.448e-8	80.65	\| Symbols: ATX1, ATATX1 \| homolog of anti-oxidant ...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal transport/detoxification protein	PFAM	PF00403	HMA	coord: 26..49 score: 1.2
IPR006121	Heavy metal transport/detoxification protein	PROFILE	PS50846	HMA_2	coord: 23..50 score: 9
IPR006121	Heavy metal transport/detoxification protein	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 18..49 score: 1.6
None	No IPR available	GENE3D	3.30.70.100	no description	coord: 22..49 score: 9.5
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 30..49 score: 1.5
None	No IPR available	SEG	seg	seg	coord: 3..15 score
None	No IPR available	SEG	seg	seg	coord: 48..59 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Vaccinium_corymbosum_v1_Contig239 ID=Vaccinium_corymbosum_v1_Contig239; Name=Vaccinium_corymbosum_v1_Contig239; organism=Vaccinium corymbosum; type=contig; length=806bp
GGCTTTCTGACCCTTTCTTCCNATTCTTCAATTCTCCTCTCGTTACCAAT
AGTAATCGCTATGTCGCAGACTGTTGTTCTCAAGGTTGGCATGTCATGCC
AAGGCTGTGTTGGTGCTGTGAAGAGGGTTCTAGGCAAAATGGACGGTCTG
TTTTTATCTCTTGACTTATCTACATTTCCTTCTTACCTTTCTTTGAAATC
ATTTGATACATTACGTCAAAACAACCTGAGCTGATATTGCATGACACTTT
TGTAATTTCTTCAGTTCTTCCTTTTTCGTAAGCAATATGATGGCGATTCT
TGATTGTTTTTCGAATTAAGAAAATCGTGTATTTTTCTGACATTTTTTCC
CTATTTTCATTTTCCAAACCTTCTATTTCTTTTGCATACGAACAAATGCA
GGAAAGCATTTGTGACACATACATGTGTGTGCTTAGGCTCTAGTGAAGAA
AAATGGCAAATATTGAAGGGGGAAAGCAAATCCTGTCAGGCTATTAATTG
AGAAATTGGCAACCCGATGCCCATTCTAATATGCTAACTCAGAAACCAAC
ATAGGGGGACTTGATATAGTTGAAGGTCTTTCAATTTGGTTTCATTCAAG
AAGGTTGTGATAGGATTGCTGAATCTGCATCAGACAAGCATTTTTCCCCA
ACTCTTCCTTGGGGTGGTTGTTTACAGTTTGTTTAATGAATGTTAGAATC
TGTTTCAGTTCAGGGGAATATCCCCCACTTTTCCCGGAAGTTCTTAACTT
AATTTGGTACATTAGGCATTTTATAGTGTACTTCGAGTTACCCTAATTAA
GAATTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR006121	HMA_dom
noIPR	unintegrated