Vaccinium_corymbosum_v1_Contig258
Contig Overview
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Alignments
The following features are aligned
Homology
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0009s02440.1 () HSP 1 Score: 96.6709 bits (239), Expect = 2.494e-20 Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSC 775 KG V CLDC H D S+I+V VKC KV+KLA TT+ DG+F+ +L CL K+LGGP Q+Y ++NMVSK+ + +SNSYT STPL F S+C Sbjct: 28 KGKVSCLDC-GGHYDYSEIKVGVKCDKVRKLATTTTQSDGSFEVKL--PPGTSTAATPLICLAKLLGGPSQLYVSRQNMVSKIVQT-HDSNSYTISTPLAFSSTC 128
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. P. persica 1.0 peptide
Match: ppa012312m () HSP 1 Score: 103.219 bits (256), Expect = 1.886e-22 Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDDAQCRPRSAGDRXNSKNGPTFPVW 865 K V CLDC + D S I+VLVKC +VKKLA+ATT++DG+F+T+L CL +ILGGPDQ+YA +K + S++ K E NSYT STPL F +SCPL +A C+ + + N P P W Sbjct: 29 KAKVTCLDC-HQNTDFSGIKVLVKCGQVKKLAMATTEKDGSFETKL----PVGNSKSPMNCLARILGGPDQLYASRKVVASEIVKT-QEPNSYTISTPLGFTTSCPL-NIKEAACKAMNKFGSSKTVNLPLPPDW 156
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: A5BY12|A5BY12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031997 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.694e-21 Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCP 778 KGSV CLDC H D S I+VLVKC +VKKLA+ATT+ DG+F+T L CL K+LGGP+Q+YAF+KN VSK+ K +S SYT STPL F ++CP Sbjct: 28 KGSVTCLDC-HRHHDFSGIKVLVKCDRVKKLAMATTEADGSFKTNL--PSDTQTSSPPLNCLAKLLGGPNQLYAFRKNTVSKIVKARDDS-SYTISTPLSFSTTCP 129
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: A9PI57|A9PI57_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_821599 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 3.641e-18 Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSC 775 KG V CLDC H D S+I+V VKC KV+KLA TT+ DG+F+ +L CL K+LGGP Q+Y ++NMVSK+ + +SNSYT STPL F S+C Sbjct: 28 KGKVSCLDC-GGHYDYSEIKVGVKCDKVRKLATTTTQSDGSFEVKL--PPGTSTAATPLICLAKLLGGPSQLYVSRQNMVSKIVQT-HDSNSYTISTPLAFSSTC 128
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: B9SCW4|B9SCW4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1281870 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.210e-18 Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCP 778 K V CLDC T+H D S I+VLVKC+ VKKLA TTK G+F+ EL CL K++GG QIYA +KNMVS++ K +S+SYT STPL F ++ P Sbjct: 28 KAKVSCLDC-TAHYDFSGIKVLVKCANVKKLATTTTKSKGSFEVEL--PSGNSKAETPLNCLAKLIGGTSQIYATRKNMVSRIVKT-KDSSSYTISTPLAFSTAFP 129
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: C6SVU8|C6SVU8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.059e-17 Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPL 781 +G V C+DC T + DLSDI+V V+C VKKLA+ATT+ DG+F+ +L CL K+LGGP Q+Y ++N VS++ K E NSYT STPL F +SCPL Sbjct: 28 QGRVFCVDC-THNYDLSDIKVSVRCDGVKKLALATTENDGSFKVDL--PLDHTKPSSVKNCLAKLLGGPVQLYVSRENQVSQIIK-GKEQNSYTISTPLSFRTSCPL 130
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: C6T0F4|C6T0F4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 6.866e-17 Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPL 781 +G V C+DC T + DLSDI+V V+C VKKLA+ATT+ DG+F+ +L CL K+LGGP Q+Y ++N VS++ K + NSYT ST L F +SCPL Sbjct: 28 QGKVSCVDC-THNYDLSDIKVSVRCDGVKKLALATTENDGSFKVDL-PLDHTKPSSSVNNCLAKLLGGPVQLYVSRENQVSQIIK-GKDQNSYTISTSLSFRTSCPL 131
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: C6SZD3|C6SZD3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.885e-15 Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPD-QIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDDAQCRPRSAGDRXNSKNGPTFPVWPPRKLG 883 +G V C DC ++D S I+V VKC VK LA+ATT+ G Q +L C TK+LGGP+ +YA +KN+VS++ K E N+YT STPL F++SCP + +C+ + +SK TF + PR+ G Sbjct: 28 EGKVSCTDCADNYD-FSGIKVSVKCEGVKNLAMATTEDKGFSQVDL---PSDQTKPPSVNCFTKLLGGPNTNLYASKKNLVSQIVK-GKEKNTYTISTPLSFFTSCP----QNTECKAANYNQFGSSK---TFDLPLPREWG 157
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: Q8L9I4|Q8L9I4_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.583e-13 Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 2 Query: 464 GSVQCLDCITSHD-DLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDD 796 G + CLDC HD D S I+VL+KC KK A DG+F++ L CL K+LGGP+Q+YA + N+VS++ K +S TTS PL F SCP DD Sbjct: 31 GKISCLDC--HHDFDFSGIKVLLKCDGEKKQITAMAAADGSFRSVLPTADKKGSIN----CLAKLLGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPLAFSLSCPKPSRDD 136
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: Q9FMQ8|Q9FMQ8_ARATH (Genomic DNA, chromosome 5, P1 clone:MWD9 OS=Arabidopsis thaliana GN=At5g22430 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.605e-13 Identity = 45/111 (40.54%), Postives = 59/111 (53.15%), Query Frame = 2 Query: 464 GSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDD 796 G + CLDC D S I+VL+KC KK A DG+F++ L CL K+LGGP+Q+YA + N+VS++ K +S TTS PL F SCP DD Sbjct: 31 GKISCLDCHRDFD-FSGIKVLLKCDGEKKQITAVAAADGSFRSVLPTADKKGSIN----CLAKLLGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPLAFSLSCPKPSRDD 136
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: D7M0X5|D7M0X5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_351266 PE=4 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.092e-12 Identity = 43/111 (38.74%), Postives = 57/111 (51.35%), Query Frame = 2 Query: 464 GSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDD 796 G + CLDC D S I+VL+KC KK A DG+F++ L CL K+LGGP+Q+YA + N+VS++ +S T S PL F SCP DD Sbjct: 31 GKISCLDCHRDFD-FSGIKVLLKCDGEKKQITAMAASDGSFRSVLPTADKKGSEN----CLAKLLGGPEQLYAHKHNLVSELVNSKHDSKVLTISNPLAFSLSCPKPTQDD 136
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. Vitis vinifera peptide
Match: GSVIVT01036094001 (assembled CDS) HSP 1 Score: 107.071 bits (266), Expect = 1.111e-23 Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 2 Query: 461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCP 778 KGSV CLDC H D S I+VLVKC +VKKLA+ATT+ DG+F+T L CL K+LGGP+Q+YAF+KN VSK+ K +S SYT STPL F ++CP Sbjct: 28 KGSVTCLDC-HRHHDFSGIKVLVKCDRVKKLAMATTEADGSFKTNL--PSDTQTSSPPLNCLAKLLGGPNQLYAFRKNTVSKIVKARDDS-SYTISTPLSFSTTCP 129
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TAIR peptide
Match: AT5G22430.1 (| Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:7433913-7434646 FORWARD LENGTH=172) HSP 1 Score: 79.7221 bits (195), Expect = 2.771e-15 Identity = 45/111 (40.54%), Postives = 59/111 (53.15%), Query Frame = 2 Query: 464 GSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDD 796 G + CLDC D S I+VL+KC KK A DG+F++ L CL K+LGGP+Q+YA + N+VS++ K +S TTS PL F SCP DD Sbjct: 31 GKISCLDCHRDFD-FSGIKVLLKCDGEKKQITAVAAADGSFRSVLPTADKKGSIN----CLAKLLGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPLAFSLSCPKPSRDD 136 The following BLAST results are available for this feature:
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide) Total hits: 1
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide) Total hits: 1
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL) Total hits: 9
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide) Total hits: 1
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
Sequences
The
following sequences are available for this feature:
contig sequence >Vaccinium_corymbosum_v1_Contig258 ID=Vaccinium_corymbosum_v1_Contig258; Name=Vaccinium_corymbosum_v1_Contig258; organism=Vaccinium corymbosum; type=contig; length=988bpback to top |