Vaccinium_corymbosum_v1_Contig258

Contig Overview
NameVaccinium_corymbosum_v1_Contig258
Unique NameVaccinium_corymbosum_v1_Contig258
Typecontig
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length988
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
DR067011DR067011Vaccinium corymbosumEST
DR067875DR067875Vaccinium corymbosumEST
EG026104EG026104Vaccinium corymbosumEST
DW043036DW043036Vaccinium corymbosumEST


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
DR067011ESTDR067011:1..343 +
DR067875ESTDR067875:2..456 +
EG026104ESTEG026104:315..989 +
DW043036ESTDW043036:315..989 +
Homology
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0009s02440.1 ()

HSP 1 Score: 96.6709 bits (239), Expect = 2.494e-20
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSC 775
            KG V CLDC   H D S+I+V VKC KV+KLA  TT+ DG+F+ +L              CL K+LGGP Q+Y  ++NMVSK+ +   +SNSYT STPL F S+C
Sbjct:   28 KGKVSCLDC-GGHYDYSEIKVGVKCDKVRKLATTTTQSDGSFEVKL--PPGTSTAATPLICLAKLLGGPSQLYVSRQNMVSKIVQT-HDSNSYTISTPLAFSSTC 128          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. P. persica 1.0 peptide
Match: ppa012312m ()

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-22
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDDAQCRPRSAGDRXNSKNGPTFPVW 865
            K  V CLDC   + D S I+VLVKC +VKKLA+ATT++DG+F+T+L              CL +ILGGPDQ+YA +K + S++ K   E NSYT STPL F +SCPL    +A C+  +      + N P  P W
Sbjct:   29 KAKVTCLDC-HQNTDFSGIKVLVKCGQVKKLAMATTEKDGSFETKL----PVGNSKSPMNCLARILGGPDQLYASRKVVASEIVKT-QEPNSYTISTPLGFTTSCPL-NIKEAACKAMNKFGSSKTVNLPLPPDW 156          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: A5BY12|A5BY12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031997 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.694e-21
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCP 778
            KGSV CLDC   H D S I+VLVKC +VKKLA+ATT+ DG+F+T L              CL K+LGGP+Q+YAF+KN VSK+ K   +S SYT STPL F ++CP
Sbjct:   28 KGSVTCLDC-HRHHDFSGIKVLVKCDRVKKLAMATTEADGSFKTNL--PSDTQTSSPPLNCLAKLLGGPNQLYAFRKNTVSKIVKARDDS-SYTISTPLSFSTTCP 129          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: A9PI57|A9PI57_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_821599 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.641e-18
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSC 775
            KG V CLDC   H D S+I+V VKC KV+KLA  TT+ DG+F+ +L              CL K+LGGP Q+Y  ++NMVSK+ +   +SNSYT STPL F S+C
Sbjct:   28 KGKVSCLDC-GGHYDYSEIKVGVKCDKVRKLATTTTQSDGSFEVKL--PPGTSTAATPLICLAKLLGGPSQLYVSRQNMVSKIVQT-HDSNSYTISTPLAFSSTC 128          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: B9SCW4|B9SCW4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1281870 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.210e-18
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCP 778
            K  V CLDC T+H D S I+VLVKC+ VKKLA  TTK  G+F+ EL              CL K++GG  QIYA +KNMVS++ K   +S+SYT STPL F ++ P
Sbjct:   28 KAKVSCLDC-TAHYDFSGIKVLVKCANVKKLATTTTKSKGSFEVEL--PSGNSKAETPLNCLAKLIGGTSQIYATRKNMVSRIVKT-KDSSSYTISTPLAFSTAFP 129          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: C6SVU8|C6SVU8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.059e-17
Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPL 781
            +G V C+DC T + DLSDI+V V+C  VKKLA+ATT+ DG+F+ +L              CL K+LGGP Q+Y  ++N VS++ K   E NSYT STPL F +SCPL
Sbjct:   28 QGRVFCVDC-THNYDLSDIKVSVRCDGVKKLALATTENDGSFKVDL--PLDHTKPSSVKNCLAKLLGGPVQLYVSRENQVSQIIK-GKEQNSYTISTPLSFRTSCPL 130          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: C6T0F4|C6T0F4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.866e-17
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPL 781
            +G V C+DC T + DLSDI+V V+C  VKKLA+ATT+ DG+F+ +L              CL K+LGGP Q+Y  ++N VS++ K   + NSYT ST L F +SCPL
Sbjct:   28 QGKVSCVDC-THNYDLSDIKVSVRCDGVKKLALATTENDGSFKVDL-PLDHTKPSSSVNNCLAKLLGGPVQLYVSRENQVSQIIK-GKDQNSYTISTSLSFRTSCPL 131          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: C6SZD3|C6SZD3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.885e-15
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPD-QIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDDAQCRPRSAGDRXNSKNGPTFPVWPPRKLG 883
            +G V C DC  ++D  S I+V VKC  VK LA+ATT+  G  Q +L              C TK+LGGP+  +YA +KN+VS++ K   E N+YT STPL F++SCP     + +C+  +     +SK   TF +  PR+ G
Sbjct:   28 EGKVSCTDCADNYD-FSGIKVSVKCEGVKNLAMATTEDKGFSQVDL---PSDQTKPPSVNCFTKLLGGPNTNLYASKKNLVSQIVK-GKEKNTYTISTPLSFFTSCP----QNTECKAANYNQFGSSK---TFDLPLPREWG 157          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: Q8L9I4|Q8L9I4_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.583e-13
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  464 GSVQCLDCITSHD-DLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDD 796
            G + CLDC   HD D S I+VL+KC   KK   A    DG+F++ L              CL K+LGGP+Q+YA + N+VS++ K   +S   TTS PL F  SCP    DD
Sbjct:   31 GKISCLDC--HHDFDFSGIKVLLKCDGEKKQITAMAAADGSFRSVLPTADKKGSIN----CLAKLLGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPLAFSLSCPKPSRDD 136          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: Q9FMQ8|Q9FMQ8_ARATH (Genomic DNA, chromosome 5, P1 clone:MWD9 OS=Arabidopsis thaliana GN=At5g22430 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.605e-13
Identity = 45/111 (40.54%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  464 GSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDD 796
            G + CLDC    D  S I+VL+KC   KK   A    DG+F++ L              CL K+LGGP+Q+YA + N+VS++ K   +S   TTS PL F  SCP    DD
Sbjct:   31 GKISCLDCHRDFD-FSGIKVLLKCDGEKKQITAVAAADGSFRSVLPTADKKGSIN----CLAKLLGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPLAFSLSCPKPSRDD 136          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Match: D7M0X5|D7M0X5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_351266 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.092e-12
Identity = 43/111 (38.74%), Postives = 57/111 (51.35%), Query Frame = 2
Query:  464 GSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDD 796
            G + CLDC    D  S I+VL+KC   KK   A    DG+F++ L              CL K+LGGP+Q+YA + N+VS++     +S   T S PL F  SCP    DD
Sbjct:   31 GKISCLDCHRDFD-FSGIKVLLKCDGEKKQITAMAASDGSFRSVLPTADKKGSEN----CLAKLLGGPEQLYAHKHNLVSELVNSKHDSKVLTISNPLAFSLSCPKPTQDD 136          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. Vitis vinifera peptide
Match: GSVIVT01036094001 (assembled CDS)

HSP 1 Score: 107.071 bits (266), Expect = 1.111e-23
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 2
Query:  461 KGSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCP 778
            KGSV CLDC   H D S I+VLVKC +VKKLA+ATT+ DG+F+T L              CL K+LGGP+Q+YAF+KN VSK+ K   +S SYT STPL F ++CP
Sbjct:   28 KGSVTCLDC-HRHHDFSGIKVLVKCDRVKKLAMATTEADGSFKTNL--PSDTQTSSPPLNCLAKLLGGPNQLYAFRKNTVSKIVKARDDS-SYTISTPLSFSTTCP 129          
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TAIR peptide
Match: AT5G22430.1 (| Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:7433913-7434646 FORWARD LENGTH=172)

HSP 1 Score: 79.7221 bits (195), Expect = 2.771e-15
Identity = 45/111 (40.54%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  464 GSVQCLDCITSHDDLSDIEVLVKCSKVKKLAVATTKQDGTFQTELXXXXXXXXXXXXXXCLTKILGGPDQIYAFQKNMVSKVSKVPSESNSYTTSTPLVFYSSCPLARDDD 796
            G + CLDC    D  S I+VL+KC   KK   A    DG+F++ L              CL K+LGGP+Q+YA + N+VS++ K   +S   TTS PL F  SCP    DD
Sbjct:   31 GKISCLDCHRDFD-FSGIKVLLKCDGEKKQITAVAAADGSFRSVLPTADKKGSIN----CLAKLLGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPLAFSLSCPKPSRDD 136          
The following BLAST results are available for this feature:
BLAST of Vaccinium_corymbosum_v1_Contig258 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0009s02440.12.494e-2049.52[more]
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BLAST of Vaccinium_corymbosum_v1_Contig258 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ppa012312m1.886e-2245.19[more]
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BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 9
Match NameE-valueIdentityDescription
A5BY12|A5BY12_VITVI2.694e-2154.72Putative uncharacterized protein OS=Vitis vinifera... [more]
A9PI57|A9PI57_POPTR3.641e-1849.52Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9SCW4|B9SCW4_RICCO6.210e-1850.00Putative uncharacterized protein OS=Ricinus commun... [more]
C6SVU8|C6SVU8_SOYBN1.059e-1749.53Putative uncharacterized protein OS=Glycine max PE... [more]
C6T0F4|C6T0F4_SOYBN6.866e-1747.66Putative uncharacterized protein OS=Glycine max PE... [more]
C6SZD3|C6SZD3_SOYBN2.885e-1539.44Putative uncharacterized protein OS=Glycine max PE... [more]
Q8L9I4|Q8L9I4_ARATH1.583e-1341.96Putative uncharacterized protein OS=Arabidopsis th... [more]
Q9FMQ8|Q9FMQ8_ARATH4.605e-1340.54Genomic DNA, chromosome 5, P1 clone:MWD9 OS=Arabid... [more]
D7M0X5|D7M0X5_ARALY5.092e-1238.74Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of Vaccinium_corymbosum_v1_Contig258 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010360940011.111e-2354.72assembled CDS[more]
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BLAST of Vaccinium_corymbosum_v1_Contig258 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G22430.12.771e-1540.54| Symbols: | Pollen Ole e 1 allergen and extensin... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 36..47
score
NoneNo IPR availableSEGsegsegcoord: 21..44
score: NAcoord: 91..104
score
NoneNo IPR availableSEGsegsegcoord: 24..31
score
NoneNo IPR availableSEGsegsegcoord: 33..45
score
NoneNo IPR availableSEGsegsegcoord: 18..32
score
IPR006041Pollen Ole e 1 allergen/extensinPFAMPF01190Pollen_Ole_e_Icoord: 45..120
score: 7.4

Sequences
The following sequences are available for this feature:

contig sequence

>Vaccinium_corymbosum_v1_Contig258 ID=Vaccinium_corymbosum_v1_Contig258; Name=Vaccinium_corymbosum_v1_Contig258; organism=Vaccinium corymbosum; type=contig; length=988bp
ACGGCAAACCGAAGTTTTCCATTCAAAGAGAAAAACATTGTCTCCCACAC
AAAGCATGATCAACAAGGAGATTAGAGTAGTAGCCACCAATTTCCATCTT
TCAGACATGGAAAATTGGGGTGAAATGAAGACAACAAACACACAAAAGGC
GATTCCATGATAGGTGCGCAAAAAACCATATCAATGCAATTTGAATGTAC
TGAGTGACAAACAACACGCACTTCTCAAGGAGGAAGAATCCACTGAATGC
AAATATAATGGGACATATGTACTTGAGCAGCCAGGAAGATACGGACAGAG
AATCACGGGACAAACCCGATATCCTTGAAGTACTCATGTTCAAGCCTCGT
GCCGAATTCGGAACAAAGGATCACTGGGGTTTCATCATCTGATAGTCTCT
GCAGTTTTAGTCTTTGCATTGGTTCTTGCTAGTGTTGAACTCTCATCAAG
TCATGTCTTGAAGGGCTCTGTTCAGTGCCTAGACTGCATTACCAGCCATG
ATGATCTTTCAGATATCGAGGTTCTAGTGAAATGCAGTAAAGTGAAGAAG
CTGGCCGTGGCAACCACAAAACAAGATGGGACATTCCAAACTGAACTTCC
CTCAGACAGTACTACTCAAACACCGACTCCTCCATCCAGTTGCCTCACCA
AGATCCTAGGTGGTCCAGACCAAATCTATGCCTTCCAAAAAAACATGGTT
TCCAAAGTTTCAAAGGTCCCATCTGAATCCAATTCCTACACCACCTCCAC
CCCTCTGGTGTTCTACTCCTCATGCCCTTTGGCAAGAGATGATGATGCCC
AATGCAGGCCCCGAAGCGCCGGGGACCGGTNCAATTCAAAGAACGGTCCA
ACCTTTCCCGTTTGGCCGCCCCGAAAGTTGGGGAACCTTGGTTCCCAATC
CAAAGCCTACTAAACATGCCCCTTTCCATTTCCCCACTCAATAGGGGATT
CCCTTGAAACTGGCCCATTTAAACTATATTTTTTGACC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated
IPR006041Pollen_Ole_e1_allergen