Vaccinium_corymbosum_v1_Contig281

Contig Overview


Name	Vaccinium_corymbosum_v1_Contig281
Unique Name	Vaccinium_corymbosum_v1_Contig281
Type	contig
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	460

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CV091484	EST	CV091484:1..461 +	Vaccinium corymbosum unigene v1	n/a
CF811137	EST	CF811137:56..461 +	Vaccinium corymbosum unigene v1	n/a
CF810900	EST	CF810900:26..461 +	Vaccinium corymbosum unigene v1	n/a
CV090815	EST	CV090815:26..461 +	Vaccinium corymbosum unigene v1	n/a
CV090676	EST	CV090676:11..461 +	Vaccinium corymbosum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
CV091484	CV091484	Vaccinium corymbosum	EST
CF811137	CF811137	Vaccinium corymbosum	EST
CF810900	CF810900	Vaccinium corymbosum	EST
CV090815	CV090815	Vaccinium corymbosum	EST
CV090676	CV090676	Vaccinium corymbosum	EST

Homology

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig281 vs. TrEMBL
Match: Q68YT2|Q68YT2_VACCO (Dehydrin COR11 OS=Vaccinium corymbosum GN=bbdhn7 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.324e-24
Identity = 55/69 (79.71%), Postives = 55/69 (79.71%), Query Frame = 1

Query:   31 MAGIMNKIGETLHMGGGKKEEDKNKVGEQHQQQQYNKPXXXXXXXXXXXXXXKEGGGFMDKVKDKIPGV 237
            MAGIMNKIGETLHMGGGKKEEDKNKVGEQHQQQQYNKP              KEGGGFMDKVKDKIPGV
Sbjct:    1 MAGIMNKIGETLHMGGGKKEEDKNKVGEQHQQQQYNKPDQHQGQYGQDQQQHKEGGGFMDKVKDKIPGV 69

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig281 vs. TrEMBL
Match: B7U4B1|B7U4B1_VACVI (Dehydrin COR11 OS=Vaccinium vitis-idaea PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.001e-18
Identity = 48/68 (70.59%), Postives = 49/68 (72.06%), Query Frame = 1

Query:   31 MAGIMNKIGETLHMGGGKKEEDKNKVGEQHQQQQYNKPXXXXXXXXXXXXXXKEGGGFMDKVKDKIPG 234
            MAGIMNKIGETLHMGGGKKEEDKNKVGEQH QQQY                 K+GGG MDKVKDKIPG
Sbjct:    1 MAGIMNKIGETLHMGGGKKEEDKNKVGEQH-QQQYQSDQRPGGQYKQDQQQHKQGGGLMDKVKDKIPG 67

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig281 vs. TrEMBL
Match: B3VML4|B3VML4_VACVI (Dehydrin COR11 OS=Vaccinium vitis-idaea PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.164e-17
Identity = 47/68 (69.12%), Postives = 48/68 (70.59%), Query Frame = 1

Query:   31 MAGIMNKIGETLHMGGGKKEEDKNKVGEQHQQQQYNKPXXXXXXXXXXXXXXKEGGGFMDKVKDKIPG 234
            MAGIMNKIGETLHMGGGKKEEDKNKVGEQH QQQY                 K+GGG MDKVKDK PG
Sbjct:    1 MAGIMNKIGETLHMGGGKKEEDKNKVGEQH-QQQYQSDQRPGGQYKQDQQQHKQGGGLMDKVKDKFPG 67

[Close]

BLAST of Vaccinium_corymbosum_v1_Contig281 vs. TrEMBL
Match: O22623|O22623_VACCO (Dehydrin 1 OS=Vaccinium corymbosum GN=bbdhn1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.285e-12
Identity = 42/68 (61.76%), Postives = 45/68 (66.18%), Query Frame = 1

Query:   31 MAGIMNKIGETLHMGGGKKEEDKNKVGEQHQQQQYNKPXXXXXXXXXXXXXXKEGGGFMDKVKDKIPG 234
            MAGIMNKIG+TL  GG K EEDK K GEQHQQQQYNKP              KEGGG M ++KDKI G
Sbjct:    1 MAGIMNKIGQTLPCGGNK-EEDKYKGGEQHQQQQYNKP--GQHQGESRQDQRKEGGGLMGELKDKIHG 65

The following BLAST results are available for this feature:

BLAST of Vaccinium_corymbosum_v1_Contig281 vs. TrEMBL

BLAST of Vaccinium_corymbosum_v1_Contig281 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 4


Match Name	E-value	Identity	Description
Q68YT2\|Q68YT2_VACCO	8.324e-24	79.71	Dehydrin COR11 OS=Vaccinium corymbosum GN=bbdhn7 P...	[more]
B7U4B1\|B7U4B1_VACVI	4.001e-18	70.59	Dehydrin COR11 OS=Vaccinium vitis-idaea PE=4 SV=1	[more]
B3VML4\|B3VML4_VACVI	1.164e-17	69.12	Dehydrin COR11 OS=Vaccinium vitis-idaea PE=4 SV=1	[more]
O22623\|O22623_VACCO	4.285e-12	61.76	Dehydrin 1 OS=Vaccinium corymbosum GN=bbdhn1 PE=2 ...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 11..80 score: 4.4
None	No IPR available	SEG	seg	seg	coord: 49..62 score: NAcoord: 80..118 score
None	No IPR available	SEG	seg	seg	coord: 16..29 score: NAcoord: 33..46 score: NAcoord: 48..55 score
None	No IPR available	SEG	seg	seg	coord: 4..15 score: NAcoord: 24..37 score: NAcoord: 52..67 score
None	No IPR available	SEG	seg	seg	coord: 36..49 score: NAcoord: 51..66 score: NAcoord: 91..126 score
None	No IPR available	SEG	seg	seg	coord: 21..34 score: NAcoord: 35..45 score
None	No IPR available	SEG	seg	seg	coord: 31..45 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Vaccinium_corymbosum_v1_Contig281 ID=Vaccinium_corymbosum_v1_Contig281; Name=Vaccinium_corymbosum_v1_Contig281; organism=Vaccinium corymbosum; type=contig; length=460bp
GGAAATACACAGAGAGAGAGGAGAGAGAAAATGGCAGGAATCATGAACAA
GATTGGCGAGACGCTCCACATGGGAGGAGGCAAAAAGGAAGAGGACAAGA
ACAAGGTAGGAGAGCAGCATCAACAGCAGCAGTACAACAAACCAGATCAG
CACCAGGGTCAGTACGGGCAGGATCAGCAGCAGCACAAGGAAGGGGGAGG
GTTTATGGACAAGGTGAAGGATAAAATCCCTGGCGTCGGCGGTGCTGGTG
GTGCCGGTCATGAGAACAAGGGGGGGGAGAAGAAGAAGAAGAAGGACAAG
AAGAAGCACGAAGACGGCCATGATCATGGTCATAGCAGCAGCAGCGACAG
CGATTAGATCGCATTCATCATCGCTGTCTTCTTTTCCTCCTATCTCTAGG
TGTGGACAGAGTCTGACTGGAGCTGCAAATAAGTGGGGGAAAAAGAAATG
AGAAGAGTGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress
GO:0009415	response to water

Vocabulary: **INTERPRO**
Term	Definition
IPR000167	Dehydrin
noIPR	unintegrated