|
Contig Overview
Name | Vaccinium_corymbosum_v1_Contig345 |
Unique Name | Vaccinium_corymbosum_v1_Contig345 |
Type | contig |
Organism | Vaccinium corymbosum (northern highbush blueberry) |
Sequence length | 632 |
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
GW397267 | EST | GW397267:37..336 + |
GW397264 | EST | GW397264:47..336 + |
HO762513 | EST | HO762513:297..571 - |
HO762512 | EST | HO762512:422..571 - |
HO762508 | EST | HO762508:298..571 - |
CV091139 | EST | CV091139:1..634 + |
GW397268 | EST | GW397268:422..604 + |
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | GENE3D | 3.10.450.10 | no description | coord: 22..95 score: 2.4 |
None | No IPR available | SEG | seg | seg | coord: 18..27 score |
Sequences
The
following sequences are available for this feature:
contig sequence >Vaccinium_corymbosum_v1_Contig345 ID=Vaccinium_corymbosum_v1_Contig345; Name=Vaccinium_corymbosum_v1_Contig345; organism=Vaccinium corymbosum; type=contig; length=632bp GCACGTAAACTAGAGTGAGAGAGATGGCCTTATTTGCGAATCCGGAAGGA ATGGTGACTAATGTTCCCGACGATATTTTGACAACCGCAAAGTTTGCTGT GGAAAGCGTAAACGAGGATCAGAATACTAAATATGTGTTTGAGCACGTTG CCTGTTACTGGCCGAAGACCTCGGGACATCGCTTTTATATGGTCATACAA GTAAGTGATCGTAACGATACAGATGTTTTTTCGGTGGTAGTCCACGAGAA TGCCAATACACTCCAGAAGAAGGTGGAACAGTTCAGATCCGTCTTTGAAG TCAATAAACAGGAGGACTAAAGACGGGCTGGTACTTCCGGAGCTGCTTGA ATAAATGTGTTGGCAAGTACAATAAGTGGCCTTCAGACCCTGATGGAATA CTTATTATCTATCTTTAGTACTGTTGGTTTGTAATAATAATTGCGGCTTT AGCCCAGACTTGTGCTTTTGTTTGTGTGGGGATTTATAGATCCCGATGTT ATTACTTTAAGACTTATTAATTCCATCATTGTATATATGGCATGGCCACA AAAAACCTCCGGATGATGTACCTGCGAATTTGTTTTATTTAAGGCGTGTT TAAAATTTATAATACCTCTGTTTTATAGTGCT back to top
Annotated Terms
The
following terms have been associated with
this contig:
Vocabulary: INTERPRO
Term | Definition |
noIPR | unintegrated |
|