Vaccinium_corymbosum_v1_Contig355

Contig Overview
NameVaccinium_corymbosum_v1_Contig355
Unique NameVaccinium_corymbosum_v1_Contig355
Typecontig
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length677
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CV091106ESTCV091106:1..677 +Vaccinium corymbosum unigene v1n/a
CF810913ESTCF810913:372..672 +Vaccinium corymbosum unigene v1n/a
CF810975ESTCF810975:368..677 +Vaccinium corymbosum unigene v1n/a
CV090428ESTCV090428:1..677 +Vaccinium corymbosum unigene v1n/a
CV090377ESTCV090377:1..677 +Vaccinium corymbosum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CV091106CV091106Vaccinium corymbosumEST
CF810913CF810913Vaccinium corymbosumEST
CF810975CF810975Vaccinium corymbosumEST
CV090428CV090428Vaccinium corymbosumEST
CV090377CV090377Vaccinium corymbosumEST


Homology
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BLAST of Vaccinium_corymbosum_v1_Contig355 vs. TrEMBL
Match: A0P8W6|A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.438e-7
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MGSKAIIFLGLFLATVLLITSEVAAKDLAETSTSTE-----QTNGVDDAK 135
            M SKA +FLGL LA VLL++SEVAA+DLAETS+ T+     +TNGV+DAK
Sbjct:    1 MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAK 50
[Close]
BLAST of Vaccinium_corymbosum_v1_Contig355 vs. TrEMBL
Match: A5BF98|A5BF98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041009 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.453e-7
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 MGSKAIIFLGLFLATVLLITSEVAAKDLAETSTSTE------QTNGVDDAK 135
            MGSKA +FL L  A +LLI+SEVAA+DLAETST  E      +TNGVDDAK
Sbjct:    1 MGSKAFVFLALLWAVLLLISSEVAARDLAETSTEQEKTEAAAKTNGVDDAK 51
[Close]
BLAST of Vaccinium_corymbosum_v1_Contig355 vs. TrEMBL
Match: D7TE62|D7TE62_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00030407001 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.139e-7
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 MGSKAIIFLGLFLATVLLITSEVAAKDLAETSTSTE------QTNGVDDAK 135
            MGSKA +FL L  A +LLI+SEVAA+DLAETST  +      +TNGVDDAK
Sbjct:    1 MGSKAFVFLALLWAVLLLISSEVAARDLAETSTEQKKTEVAAKTNGVDDAK 51
[Close]
BLAST of Vaccinium_corymbosum_v1_Contig355 vs. Vitis vinifera peptide
Match: GSVIVT01030407001 (assembled CDS)

HSP 1 Score: 58.151 bits (139), Expect = 3.404e-9
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 MGSKAIIFLGLFLATVLLITSEVAAKDLAETSTSTE------QTNGVDDAK 135
            MGSKA +FL L  A +LLI+SEVAA+DLAETST  +      +TNGVDDAK
Sbjct:    1 MGSKAFVFLALLWAVLLLISSEVAARDLAETSTEQKKTEVAAKTNGVDDAK 51
The following BLAST results are available for this feature:
BLAST of Vaccinium_corymbosum_v1_Contig355 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0P8W6|A0P8W6_CUCSA1.438e-764.00Cell wall glycine-rich protein OS=Cucumis sativus ... [more]
A5BF98|A5BF98_VITVI2.453e-764.71Putative uncharacterized protein OS=Vitis vinifera... [more]
D7TE62|D7TE62_VITVI7.139e-762.75Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of Vaccinium_corymbosum_v1_Contig355 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010304070013.404e-962.75assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 1..9
score: 1.7e-07coord: 77..92
score: 1.7e-07coord: 102..112
score: 1.7e-07coord: 141..154
score: 1.7
NoneNo IPR availableSEGsegsegcoord: 46..153
score
NoneNo IPR availableSEGsegsegcoord: 18..48
score: NAcoord: 75..85
score: NAcoord: 86..115
score
NoneNo IPR availableSEGsegsegcoord: 4..91
score
NoneNo IPR availableSEGsegsegcoord: 3..113
score
NoneNo IPR availableSEGsegsegcoord: 1..49
score: NAcoord: 51..67
score: NAcoord: 79..118
score

Sequences
The following sequences are available for this feature:

contig sequence

>Vaccinium_corymbosum_v1_Contig355 ID=Vaccinium_corymbosum_v1_Contig355; Name=Vaccinium_corymbosum_v1_Contig355; organism=Vaccinium corymbosum; type=contig; length=677bp
ATGGGTTCCAAAGCAATTATTTTCCTTGGCCTTTTTCTGGCCACTGTTCT
TCTCATTACCTCGGAGGTAGCAGCTAAGGATTTGGCTGAAACTTCCACTT
CTACTGAACAAACTAATGGCGTAGATGACGCCAAGTACGGCGGCGGTTAT
GGAGGCGGGCGTGGCGGTGGATACGGAGGCGGGCGTGGCGGAGGCTATGG
AGGCGGCCGTGGAGGAGGATATGGAGGCGGACGAGGGGGAGGATATGGAG
GCGGACGAGGGGGAGGTTACGAAGGAGGACATGGCGGAGGATACGGAGGT
GGATATGGAGGCGGACGAGGGGGAGGTTACGAAGGAGGACATGGCGGAGG
ATACGGAGGTGGACGTGGTGGAGGATACGAAGGTGGGCGTGGCGGCGGTT
ATGAAGGAGGCCGAGGTGGAAGAGGAGGAGGCGGTTACGAAGGAGGCCGA
GGCGGCGGCTTTTGAGGAGCTACGGAATTAACGTTATAGCTTATAGGTGC
CATTTATGATATCCGTGCACCGTGTTATAAGACTACGTATGAATAATGGA
TGATATCCGATTATGCACTTCACATTGAGAGCCATGACCTAGTTCTTCTG
TGAGGGCATGGTGTGTGTTTATCAGTGTTTGGTTCCATGTAAAAGCACGT
ACTTTTAATGATACTATGTTGTAAAGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated