Vaccinium_corymbosum_v1_Contig420
Contig Overview
Alignments
The following features are aligned
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Homology
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s02410.1 () HSP 1 Score: 58.5362 bits (140), Expect = 5.610e-9 Identity = 44/120 (36.67%), Postives = 52/120 (43.33%), Query Frame = 3 Query: 51 DKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAK 410 D S+ E T +SE K LK +KVD RQ RGKA S+ + T SS KDDDKE PS KSA AK +E EE P TS+K+K K Sbjct: 552 DASRKESNTTGESEAKLLKQSSKKVDGSSSNDGLSLKQSEDKK-RQSRGKAASEKHATKSSTKDDDKEKTPSTKSAAKSAK------------------EEHHLEETPVTSTKRKRGDEK 652
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.7 () HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8 Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3 Query: 51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425 D SK E T +SE K LK +KVD + RQ GKA+S+ ++T S KDDDKE S KSA AK +E EE P TS+K+K EK + Sbjct: 556 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.6 () HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8 Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3 Query: 51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425 D SK E T +SE K LK +KVD + RQ GKA+S+ ++T S KDDDKE S KSA AK +E EE P TS+K+K EK + Sbjct: 556 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.5 () HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8 Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3 Query: 51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425 D SK E T +SE K LK +KVD + RQ GKA+S+ ++T S KDDDKE S KSA AK +E EE P TS+K+K EK + Sbjct: 556 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.3 () HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8 Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3 Query: 51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425 D SK E T +SE K LK +KVD + RQ GKA+S+ ++T S KDDDKE S KSA AK +E EE P TS+K+K EK + Sbjct: 555 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 662
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.2 () HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8 Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3 Query: 51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425 D SK E T +SE K LK +KVD + RQ GKA+S+ ++T S KDDDKE S KSA AK +E EE P TS+K+K EK + Sbjct: 556 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.1 () HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8 Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3 Query: 51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425 D SK E T +SE K LK +KVD + RQ GKA+S+ ++T S KDDDKE S KSA AK +E EE P TS+K+K EK + Sbjct: 580 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 687
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.4 () HSP 1 Score: 51.9878 bits (123), Expect = 5.251e-7 Identity = 40/123 (32.52%), Postives = 52/123 (42.28%), Query Frame = 3 Query: 60 KSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425 K + T +SE K LK +KVD + RQ GKA+S+ ++T S KDDDKE S KSA AK +E EE P TS+K+K EK + Sbjct: 559 KEKSNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. TrEMBL
Match: B9RNW7|B9RNW7_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0921600 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 4.819e-9 Identity = 46/142 (32.39%), Postives = 61/142 (42.96%), Query Frame = 3 Query: 3 KATAGRTTEESTPALADKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEEE 428 KA A + EE P D S+ E G +SE+KPLK +K D+ ++ RGK+ S+ L+ SS KD DKE V S KSA K + L EE PKT +K+K +K E Sbjct: 539 KAPARISNEERAPMATDVSQKESGPTDESEEKPLKQPSKKADSSSNNGDGSSLNQPEDKKQRSRGKSTSEKKLSKSSTKDYDKEKVSSPKSAAKSTKDL------------------HLLEETPKTDTKRKRASDSKKASGE 662
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. TrEMBL
Match: A2DFD4|A2DFD4_TRIVA (Putative uncharacterized protein OS=Trichomonas vaginalis GN=TVAG_436860 PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 8.220e-9 Identity = 49/189 (25.93%), Postives = 81/189 (42.86%), Query Frame = 3 Query: 27 EESTPALADKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSV---KSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKH------------TPA-KEKVEEEMPKTSSKRKHAPAKETVDEEVPVTSSKGKRTPAKEKASD 545 EE TPA+ +K K E + +++ + +K + ++ A+ + + A ++ KE P+V K + +K +E+ P +E+ EEE+P KK+ TPA +EK EEE P K + PA+E +EE PV K + TPA+EK + Sbjct: 587 EEETPAVEEKKKEETPAVEEKKEETPAVEEKKEET------------PVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAQEKKEETPATEEKKEEESPVAEEKKEEETPVAEEKKEEETPAVEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEE 763 HSP 2 Score: 64.3142 bits (155), Expect = 1.402e-8 Identity = 44/176 (25.00%), Postives = 72/176 (40.91%), Query Frame = 3 Query: 27 EESTPALADKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLA---KKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEEEMPKTSSKRKHAPAKETVDEEVPVTSSKGKRTPAKEKASD 545 EE TP +K + E + +++ + +K + + K + K +++ V K +K +E+ P V+E+ EEE P K++ TPA+EK EEE P K + PA+E +EE PV K + TPA+EK + Sbjct: 700 EEETPVAEEKKEEETPAVEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEETPATEEKKEEESPVAEEKKEEETPVAEEKKEEETPA---------VEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEE 866 HSP 3 Score: 62.003 bits (149), Expect = 6.958e-8 Identity = 46/182 (25.27%), Postives = 75/182 (41.21%), Query Frame = 3 Query: 27 EESTPALADKS---------KSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEEEMPKTSSKRKHAPAKETVDEEVPVTSSKGKRTPAKEKASD 545 EE TPA+ +K K E A + +++ + +K + + A K A++ +E P+V+ +K +E+ P V+E+ EEE P K++ TP +EK EEE P K + P +E +EE P K + TPA+EK + Sbjct: 711 EEETPAVEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEETPATEEKKEEESPVAEEKKEEETPVAEEKKEEETPAVE------EKKEEETP----------VEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEEETPAQEKKEE 876 HSP 4 Score: 59.6918 bits (143), Expect = 3.453e-7 Identity = 36/105 (34.29%), Postives = 48/105 (45.71%), Query Frame = 3 Query: 234 AKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEEEMPKTSSKRKH-APAKETVDEEVPVTSSKGKRTPAKEKASD 545 A ++ KE P+V+ KK +E EE +EE P KK+ TP +EK EEE P K+K PA E EE P K + TP +EK + Sbjct: 530 AVEEKKEETPAVEE-----KKKEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEE 629 HSP 5 Score: 58.5362 bits (140), Expect = 7.693e-7 Identity = 40/130 (30.77%), Postives = 57/130 (43.85%), Query Frame = 3 Query: 201 AISKNNLTISSAKDDDKETVPSV---KSALNLAKKVDEDAPXXXXXXXXXX-VKEELEEEAPKTSSKKKHTPAKEKVEEEMPKTSSKRKH-----------APAKETVDEEVPVTSSKGKRTPAKEKASD 545 A+ + + A ++ KE P+V K + +K +E+ P EE +EE P KK+ TP +EK EEE P K+K PA E EE PV K + TPA+EK + Sbjct: 551 AVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAQEKKEE 680
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. TrEMBL
Match: B9IL45|B9IL45_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_578270 PE=4 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 5.328e-8 Identity = 45/120 (37.50%), Postives = 53/120 (44.17%), Query Frame = 3 Query: 51 DKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAK 410 D S+ E T +SE KPLK +KVD RQ RGKA S+ + T SS KDDDKE PS KSA AK +E EE P TS+K+K K Sbjct: 618 DASRKESNTTGESEAKPLKQSSKKVDGSSSNDGLSLKQSEDKK-RQSRGKAASEKHATKSSTKDDDKEKTPSTKSAAKSAK------------------EEHHLEETPVTSTKRKRGDEK 718
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Vitis vinifera peptide
Match: GSVIVT01035890001 (assembled CDS) HSP 1 Score: 52.373 bits (124), Expect = 2.435e-7 Identity = 44/141 (31.21%), Postives = 61/141 (43.26%), Query Frame = 3 Query: 3 KATAGRTTEESTPALADKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425 +A++G T E+ T A T +DS + PLK +KVD R GRGKA+ + +T +KDD+KE + S KSA K V +++ EE PK SK KHT K K + Sbjct: 516 RASSGITEEDKTSA----------TMTDSVENPLKKSGKKVDTSKNEDGSSLKPQEDRKKR-GRGKAVLEKEMTKFLSKDDEKEMLSSPKSA---GKSVKDESHL---------------EETPKMLSKGKHTSGKRKASD 627 The following BLAST results are available for this feature:
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide) Total hits: 8
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL) Total hits: 3
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
Sequences
The
following sequences are available for this feature:
contig sequence >Vaccinium_corymbosum_v1_Contig420 ID=Vaccinium_corymbosum_v1_Contig420; Name=Vaccinium_corymbosum_v1_Contig420; organism=Vaccinium corymbosum; type=contig; length=808bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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