Vaccinium_corymbosum_v1_Contig420

Contig Overview
NameVaccinium_corymbosum_v1_Contig420
Unique NameVaccinium_corymbosum_v1_Contig420
Typecontig
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length808
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CF810894ESTCF810894:1..617 +Vaccinium corymbosum unigene v1n/a
CV090811ESTCV090811:1..808 +Vaccinium corymbosum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CF810894CF810894Vaccinium corymbosumEST
CV090811CV090811Vaccinium corymbosumEST


Homology
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s02410.1 ()

HSP 1 Score: 58.5362 bits (140), Expect = 5.610e-9
Identity = 44/120 (36.67%), Postives = 52/120 (43.33%), Query Frame = 3
Query:   51 DKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAK 410
            D S+ E  T  +SE K LK   +KVD                  RQ RGKA S+ + T SS KDDDKE  PS KSA   AK                  +E   EE P TS+K+K    K
Sbjct:  552 DASRKESNTTGESEAKLLKQSSKKVDGSSSNDGLSLKQSEDKK-RQSRGKAASEKHATKSSTKDDDKEKTPSTKSAAKSAK------------------EEHHLEETPVTSTKRKRGDEK 652          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.7 ()

HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8
Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3
Query:   51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425
            D SK E  T  +SE K LK   +KVD +                 RQ  GKA+S+ ++T S  KDDDKE   S KSA   AK                  +E   EE P TS+K+K     EK  +
Sbjct:  556 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.6 ()

HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8
Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3
Query:   51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425
            D SK E  T  +SE K LK   +KVD +                 RQ  GKA+S+ ++T S  KDDDKE   S KSA   AK                  +E   EE P TS+K+K     EK  +
Sbjct:  556 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.5 ()

HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8
Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3
Query:   51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425
            D SK E  T  +SE K LK   +KVD +                 RQ  GKA+S+ ++T S  KDDDKE   S KSA   AK                  +E   EE P TS+K+K     EK  +
Sbjct:  556 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.3 ()

HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8
Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3
Query:   51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425
            D SK E  T  +SE K LK   +KVD +                 RQ  GKA+S+ ++T S  KDDDKE   S KSA   AK                  +E   EE P TS+K+K     EK  +
Sbjct:  555 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 662          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.2 ()

HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8
Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3
Query:   51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425
            D SK E  T  +SE K LK   +KVD +                 RQ  GKA+S+ ++T S  KDDDKE   S KSA   AK                  +E   EE P TS+K+K     EK  +
Sbjct:  556 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.1 ()

HSP 1 Score: 56.9954 bits (136), Expect = 1.632e-8
Identity = 43/126 (34.13%), Postives = 54/126 (42.86%), Query Frame = 3
Query:   51 DKSKSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425
            D SK E  T  +SE K LK   +KVD +                 RQ  GKA+S+ ++T S  KDDDKE   S KSA   AK                  +E   EE P TS+K+K     EK  +
Sbjct:  580 DASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 687          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s27920.4 ()

HSP 1 Score: 51.9878 bits (123), Expect = 5.251e-7
Identity = 40/123 (32.52%), Postives = 52/123 (42.28%), Query Frame = 3
Query:   60 KSEGGTASDSEDKPLKLCVRKVD-ARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425
            K +  T  +SE K LK   +KVD +                 RQ  GKA+S+ ++T S  KDDDKE   S KSA   AK                  +E   EE P TS+K+K     EK  +
Sbjct:  559 KEKSNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAK------------------EEHHLEETPVTSTKRKRAAGDEKAPD 663          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. TrEMBL
Match: B9RNW7|B9RNW7_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0921600 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.819e-9
Identity = 46/142 (32.39%), Postives = 61/142 (42.96%), Query Frame = 3
Query:    3 KATAGRTTEESTPALADKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEEE 428
            KA A  + EE  P   D S+ E G   +SE+KPLK   +K D+                 ++ RGK+ S+  L+ SS KD DKE V S KSA    K +                   L EE PKT +K+K     +K   E
Sbjct:  539 KAPARISNEERAPMATDVSQKESGPTDESEEKPLKQPSKKADSSSNNGDGSSLNQPEDKKQRSRGKSTSEKKLSKSSTKDYDKEKVSSPKSAAKSTKDL------------------HLLEETPKTDTKRKRASDSKKASGE 662          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. TrEMBL
Match: A2DFD4|A2DFD4_TRIVA (Putative uncharacterized protein OS=Trichomonas vaginalis GN=TVAG_436860 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 8.220e-9
Identity = 49/189 (25.93%), Postives = 81/189 (42.86%), Query Frame = 3
Query:   27 EESTPALADKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSV---KSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKH------------TPA-KEKVEEEMPKTSSKRKHAPAKETVDEEVPVTSSKGKRTPAKEKASD 545
            EE TPA+ +K K E     + +++   +  +K +                  ++    A+ +     + A ++ KE  P+V   K    + +K +E+ P           +E+ EEE+P    KK+             TPA +EK EEE P    K +  PA+E  +EE PV   K + TPA+EK  +
Sbjct:  587 EEETPAVEEKKKEETPAVEEKKEETPAVEEKKEET------------PVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAQEKKEETPATEEKKEEESPVAEEKKEEETPVAEEKKEEETPAVEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEE 763          

HSP 2 Score: 64.3142 bits (155), Expect = 1.402e-8
Identity = 44/176 (25.00%), Postives = 72/176 (40.91%), Query Frame = 3
Query:   27 EESTPALADKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLA---KKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEEEMPKTSSKRKHAPAKETVDEEVPVTSSKGKRTPAKEKASD 545
            EE TP   +K + E     + +++   +  +K +                   +       K     +  K +++  V   K         +K +E+ P          V+E+ EEE P    K++ TPA+EK EEE P    K +  PA+E  +EE PV   K + TPA+EK  +
Sbjct:  700 EEETPVAEEKKEEETPAVEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEETPATEEKKEEESPVAEEKKEEETPVAEEKKEEETPA---------VEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEE 866          

HSP 3 Score: 62.003 bits (149), Expect = 6.958e-8
Identity = 46/182 (25.27%), Postives = 75/182 (41.21%), Query Frame = 3
Query:   27 EESTPALADKS---------KSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEEEMPKTSSKRKHAPAKETVDEEVPVTSSKGKRTPAKEKASD 545
            EE TPA+ +K          K E   A + +++   +  +K +                   +    A  K       A++  +E  P+V+      +K +E+ P          V+E+ EEE P    K++ TP +EK EEE P    K +  P +E  +EE P    K + TPA+EK  +
Sbjct:  711 EEETPAVEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEETPATEEKKEEESPVAEEKKEEETPVAEEKKEEETPAVE------EKKEEETP----------VEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEEETPAEEKKEEETPAQEKKEE 876          

HSP 4 Score: 59.6918 bits (143), Expect = 3.453e-7
Identity = 36/105 (34.29%), Postives = 48/105 (45.71%), Query Frame = 3
Query:  234 AKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEEEMPKTSSKRKH-APAKETVDEEVPVTSSKGKRTPAKEKASD 545
            A ++ KE  P+V+      KK +E               EE +EE P    KK+ TP +EK EEE P    K+K   PA E   EE P    K + TP +EK  +
Sbjct:  530 AVEEKKEETPAVEE-----KKKEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEE 629          

HSP 5 Score: 58.5362 bits (140), Expect = 7.693e-7
Identity = 40/130 (30.77%), Postives = 57/130 (43.85%), Query Frame = 3
Query:  201 AISKNNLTISSAKDDDKETVPSV---KSALNLAKKVDEDAPXXXXXXXXXX-VKEELEEEAPKTSSKKKHTPAKEKVEEEMPKTSSKRKH-----------APAKETVDEEVPVTSSKGKRTPAKEKASD 545
            A+ +     + A ++ KE  P+V   K    + +K +E+ P             EE +EE P    KK+ TP +EK EEE P    K+K             PA E   EE PV   K + TPA+EK  +
Sbjct:  551 AVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAQEKKEE 680          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. TrEMBL
Match: B9IL45|B9IL45_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_578270 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.328e-8
Identity = 45/120 (37.50%), Postives = 53/120 (44.17%), Query Frame = 3
Query:   51 DKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAK 410
            D S+ E  T  +SE KPLK   +KVD                  RQ RGKA S+ + T SS KDDDKE  PS KSA   AK                  +E   EE P TS+K+K    K
Sbjct:  618 DASRKESNTTGESEAKPLKQSSKKVDGSSSNDGLSLKQSEDKK-RQSRGKAASEKHATKSSTKDDDKEKTPSTKSAAKSAK------------------EEHHLEETPVTSTKRKRGDEK 718          
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Vitis vinifera peptide
Match: GSVIVT01035890001 (assembled CDS)

HSP 1 Score: 52.373 bits (124), Expect = 2.435e-7
Identity = 44/141 (31.21%), Postives = 61/141 (43.26%), Query Frame = 3
Query:    3 KATAGRTTEESTPALADKSKSEGGTASDSEDKPLKLCVRKVDARXXXXXXXXXXXXXXXXRQGRGKAISKNNLTISSAKDDDKETVPSVKSALNLAKKVDEDAPXXXXXXXXXXVKEELEEEAPKTSSKKKHTPAKEKVEE 425
            +A++G T E+ T A          T +DS + PLK   +KVD                  R GRGKA+ +  +T   +KDD+KE + S KSA    K V +++                 EE PK  SK KHT  K K  +
Sbjct:  516 RASSGITEEDKTSA----------TMTDSVENPLKKSGKKVDTSKNEDGSSLKPQEDRKKR-GRGKAVLEKEMTKFLSKDDEKEMLSSPKSA---GKSVKDESHL---------------EETPKMLSKGKHTSGKRKASD 627          
The following BLAST results are available for this feature:
BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 8
Match NameE-valueIdentityDescription
POPTR_0018s02410.15.610e-936.67[more]
POPTR_0006s27920.71.632e-834.13[more]
POPTR_0006s27920.61.632e-834.13[more]
POPTR_0006s27920.51.632e-834.13[more]
POPTR_0006s27920.31.632e-834.13[more]
POPTR_0006s27920.21.632e-834.13[more]
POPTR_0006s27920.11.632e-834.13[more]
POPTR_0006s27920.45.251e-732.52[more]
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BLAST of Vaccinium_corymbosum_v1_Contig420 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
B9RNW7|B9RNW7_RICCO4.819e-932.39Nucleic acid binding protein, putative OS=Ricinus ... [more]
A2DFD4|A2DFD4_TRIVA8.220e-925.93Putative uncharacterized protein OS=Trichomonas va... [more]
B9IL45|B9IL45_POPTR5.328e-837.50Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of Vaccinium_corymbosum_v1_Contig420 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010358900012.435e-731.21assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 6..26
score
NoneNo IPR availableSEGsegsegcoord: 45..60
score: NAcoord: 105..114
score
NoneNo IPR availableSEGsegsegcoord: 61..75
score
NoneNo IPR availableSEGsegsegcoord: 106..111
score
NoneNo IPR availableSEGsegsegcoord: 46..78
score
NoneNo IPR availableSEGsegsegcoord: 38..51
score

Sequences
The following sequences are available for this feature:

contig sequence

>Vaccinium_corymbosum_v1_Contig420 ID=Vaccinium_corymbosum_v1_Contig420; Name=Vaccinium_corymbosum_v1_Contig420; organism=Vaccinium corymbosum; type=contig; length=808bp
AAAAGGCTACTGCTGGTCGTACTACTGAGGAGAGCACTCCAGCTTTGGCC
GATAAATCCAAGAGTGAAGGGGGGACTGCTAGTGATTCGGAGGACAAACC
ATTGAAACTCTGTGTTAGGAAGGTAGATGCTAGGGATAAAAGTGGAGATG
GATCCTCATCAAAGAATAAGGAAGATGGGAAAAGGCAGGGACGTGGAAAA
GCTATTTCAAAGAACAATTTAACAATCTCCTCCGCCAAAGATGATGACAA
AGAAACGGTCCCTTCAGTTAAGTCTGCCTTGAACTTAGCTAAGAAGGTTG
ATGAGGATGCTCCCAAGACAAGTTCCAAGAGAAAGCGCTCAACAGTGAAA
GAGGAACTTGAAGAGGAGGCACCCAAGACAAGTTCCAAGAAAAAGCACAC
ACCAGCAAAAGAGAAAGTGGAAGAGGAAATGCCCAAGACAAGTTCCAAGA
GAAAGCACGCACCAGCAAAAGAGACAGTTGATGAGGAAGTCCCTGTGACA
AGTTCCAAGGGAAAGCGCACCCCAGCGAAAGAGAAAGCATCCGATGCTGT
AAAGTACGGGGTTAACCTGATTGATTCAAAGGTTAAGGTTTGGTGGCCAG
ATGATAAGAAGTAAGTACTTCCAAGCACTAGCTGAGGGGCAATAATTTGA
AAAAATGTTTCTTTATATTTCTCTCTTCTTTTTTAATTCTAGTATTATGC
CTTGTCTTTGGTGCAAAGTCATTTTTTGGTGTTGTGCTAGTGCTAGTGCA
TTGTGTATTGTCTACTTCCGGTTGCAACAGGTACATTTTCTAATNATTTC
TCATTNGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated