Vaccinium_corymbosum_v1_Contig43

Contig Overview
NameVaccinium_corymbosum_v1_Contig43
Unique NameVaccinium_corymbosum_v1_Contig43
Typecontig
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length760
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
HO762511HO762511Vaccinium corymbosumEST
EG026062EG026062Vaccinium corymbosumEST
DW043022DW043022Vaccinium corymbosumEST


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
HO762511ESTHO762511:95..214 -
EG026062ESTEG026062:1..760 +
DW043022ESTDW043022:1..760 +
Homology
[Close]
BLAST of Vaccinium_corymbosum_v1_Contig43 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0014s01940.1 ()

HSP 1 Score: 54.6842 bits (130), Expect = 7.453e-8
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = -2 
Query:  229 YQVGFLQGYNRNEGAEFEAETNAAASKESNKPKEMKAFVIKDDP-VPKYKAFFEFFVPLFVAGSF 420
            YQVG LQG+  NE  ++       AS   +K KEM AFVIKDD  +PKY+AF EF +PL   G +
Sbjct:   77 YQVGVLQGHAFNEADKY-------ASFVESKHKEMSAFVIKDDDKMPKYQAFLEFVLPLVFTGFY 134
[Close]
BLAST of Vaccinium_corymbosum_v1_Contig43 vs. TrEMBL
Match: Q9ZSP7|Q9ZSP7_PETHY (Cytochrome B5 OS=Petunia hybrida GN=difF PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.938e-10
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = -2 
Query:  226 YQVGFLQGYNRNEGAEFEAETNAAASKESNKPKEMKAFVIKDDPVPKYKAFFEFFVPLFVAGSFL 420
            YQ+G+LQGY  ++ +E E      + KE NK KEMKA+VIK+DP PKY  F E+ +P   A  +L
Sbjct:   74 YQIGYLQGYKASDDSELELNLVTDSIKEPNKAKEMKAYVIKEDPKPKYLTFVEYLLPFLAAAFYL 138

HSP 2 Score: 20.7866 bits (42), Expect = 1.938e-10
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = -3 
Query:  195 YRYLTGATQ 221
            YRYLTGA Q
Sbjct:  140 YRYLTGALQ 148
[Close]
BLAST of Vaccinium_corymbosum_v1_Contig43 vs. TrEMBL
Match: Q9M5B0|Q9M5B0_PETHY (Cytochrome b5 DIF-F OS=Petunia hybrida GN=difF PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.938e-10
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = -2 
Query:  226 YQVGFLQGYNRNEGAEFEAETNAAASKESNKPKEMKAFVIKDDPVPKYKAFFEFFVPLFVAGSFL 420
            YQ+G+LQGY  ++ +E E      + KE NK KEMKA+VIK+DP PKY  F E+ +P   A  +L
Sbjct:   74 YQIGYLQGYKASDDSELELNLVTDSIKEPNKAKEMKAYVIKEDPKPKYLTFVEYLLPFLAAAFYL 138

HSP 2 Score: 20.7866 bits (42), Expect = 1.938e-10
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = -3 
Query:  195 YRYLTGATQ 221
            YRYLTGA Q
Sbjct:  140 YRYLTGALQ 148
[Close]
BLAST of Vaccinium_corymbosum_v1_Contig43 vs. TrEMBL
Match: A5B9D6|A5B9D6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028490 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.335e-9
Identity = 38/64 (59.38%), Postives = 41/64 (64.06%), Query Frame = -2 
Query:  229 YQVGFLQGYNRNEGAEFEAETNAAASKESNKPKEMKAFVIKDDPVPKYKAFFEFFVPLFVAGSF 420
            YQVG LQGYN  +GA   A T  A  KE+ K KEM AFVIK+D  P Y A  EF VPL VAG F
Sbjct:   74 YQVGVLQGYNIQDGA---ASTKDAPYKET-KTKEMSAFVIKNDSTPTYAALLEFLVPLLVAGFF 133
[Close]
BLAST of Vaccinium_corymbosum_v1_Contig43 vs. Vitis vinifera peptide
Match: GSVIVT01009376001 (assembled CDS)

HSP 1 Score: 65.855 bits (159), Expect = 1.962e-11
Identity = 38/64 (59.38%), Postives = 41/64 (64.06%), Query Frame = -2 
Query:  229 YQVGFLQGYNRNEGAEFEAETNAAASKESNKPKEMKAFVIKDDPVPKYKAFFEFFVPLFVAGSF 420
            YQVG LQGYN  +GA   A T  A  KE+ K KEM AFVIK+D  P Y A  EF VPL VAG F
Sbjct:   74 YQVGVLQGYNIQDGA---ASTKDAPYKET-KTKEMSAFVIKNDSTPTYAALLEFLVPLLVAGFF 133
The following BLAST results are available for this feature:
BLAST of Vaccinium_corymbosum_v1_Contig43 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0014s01940.17.453e-849.23[more]
back to top
BLAST of Vaccinium_corymbosum_v1_Contig43 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
Q9ZSP7|Q9ZSP7_PETHY1.938e-1047.69Cytochrome B5 OS=Petunia hybrida GN=difF PE=2 SV=1[more]
Q9M5B0|Q9M5B0_PETHY1.938e-1047.69Cytochrome b5 DIF-F OS=Petunia hybrida GN=difF PE=... [more]
A5B9D6|A5B9D6_VITVI4.335e-959.38Putative uncharacterized protein OS=Vitis vinifera... [more]
back to top
BLAST of Vaccinium_corymbosum_v1_Contig43 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010093760011.962e-1159.38assembled CDS[more]
back to top
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 36..52
score
NoneNo IPR availableSEGsegsegcoord: 16..33
score
NoneNo IPR availableSEGsegsegcoord: 25..40
score
NoneNo IPR availableSEGsegsegcoord: 2..11
score: NAcoord: 31..43
score: NAcoord: 87..108
score
NoneNo IPR availableSEGsegsegcoord: 56..76
score

Sequences
The following sequences are available for this feature:

contig sequence

>Vaccinium_corymbosum_v1_Contig43 ID=Vaccinium_corymbosum_v1_Contig43; Name=Vaccinium_corymbosum_v1_Contig43; organism=Vaccinium corymbosum; type=contig; length=760bp
AAAATCCAATCCAAATCCAACTTATGTTAATCCGCTTAACATAATCCAGA
TCCGAATCCAAAATATTGGATATCCGATCCCAATTTTTATTTTTTCGACA
TACTTAGCATTAAAACATATCACAATATCTCATGCTGTTTCAAGACCAAA
AGATACCATTCCAATATACTATCGCCTGATCATTAAGATCCGATCTGGGT
TGCTCCGGTCAGGTACCGGTAGCCGAAGAAAGGATCCGGCGACAAACAGA
GGAACAAAGAACTCGAAAAAAGCCTTATATTTCGGCACCGGATCGTCCTT
GATCACAAACGCTTTCATCTCTTTAGGCTTGTTGGATTCCTTGGAAGCAG
CAGCGTTAGTCTCAGCTTCAAACTCAGCGCCTTCATTGCGGTTGTAACCT
TGGAGGAACCCTACCTGGTATTTGAGGAGCAATTGTTTTTGCAGCCTTGG
CTATGGCCAAATATAAATACAAACCACACATAAGGATAAGCAGTACTTTT
TTTCCCGGGGCCCCGAAACTTCGAAAATTCAAACCCACCCCCTTCCCCTC
CCTTCCCTCCCCCCGGGGGGTTTGTTTCCTTTTCCCCAAAAAAAAATTTT
TGGGGTTCACCGTTCCCACCCACCCTCCTTGGCCATTTGGATTGATGAAA
CCCCCCCCATTCTCTTTTTTTGGGACTTGGTTTGTTGAGGCGCACCCTGG
TGAAAAGGGGGGTTGAACCCCCCCCTTTCCNTTTTTCTCCCCTTTTTTGG
GTTANTTAAA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated