Vaccinium_corymbosum_v1_Contig61

Contig Overview
NameVaccinium_corymbosum_v1_Contig61
Unique NameVaccinium_corymbosum_v1_Contig61
Typecontig
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length532
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
DW043311DW043311Vaccinium corymbosumEST
DW043478DW043478Vaccinium corymbosumEST
DW043165DW043165Vaccinium corymbosumEST
EG026022EG026022Vaccinium corymbosumEST
CV190846CV190846Vaccinium corymbosumEST
DW043228DW043228Vaccinium corymbosumEST
DW043365DW043365Vaccinium corymbosumEST
DW043519DW043519Vaccinium corymbosumEST
DW043210DW043210Vaccinium corymbosumEST
CF810802CF810802Vaccinium corymbosumEST
DW043259DW043259Vaccinium corymbosumEST
CF810763CF810763Vaccinium corymbosumEST
CF811328CF811328Vaccinium corymbosumEST
CV091278CV091278Vaccinium corymbosumEST
CF811042CF811042Vaccinium corymbosumEST


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
DW043311ESTDW043311:2..356 +
DW043478ESTDW043478:5..418 +
DW043165ESTDW043165:5..407 +
EG026022ESTEG026022:1..521 -
CV190846ESTCV190846:41..519 +
DW043228ESTDW043228:72..521 -
DW043365ESTDW043365:2..521 -
DW043519ESTDW043519:5..521 -
DW043210ESTDW043210:5..524 -
CF810802ESTCF810802:52..530 +
DW043259ESTDW043259:17..524 -
CF810763ESTCF810763:52..534 +
CF811328ESTCF811328:69..532 +
CV091278ESTCV091278:63..528 +
CF811042ESTCF811042:206..528 -
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 2..89
score: 3.5
NoneNo IPR availableSEGsegsegcoord: 7..21
score: NAcoord: 47..89
score
NoneNo IPR availableSEGsegsegcoord: 5..53
score
NoneNo IPR availableSEGsegsegcoord: 4..50
score
NoneNo IPR availableSEGsegsegcoord: 2..50
score: NAcoord: 56..71
score
NoneNo IPR availableSEGsegsegcoord: 9..55
score
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 1..8
score: 4.7e-12coord: 12..24
score: 4.7e-12coord: 28..49
score: 4.7
NoneNo IPR availableSEGsegsegcoord: 1..43
score: NAcoord: 68..82
score

Sequences
The following sequences are available for this feature:

contig sequence

>Vaccinium_corymbosum_v1_Contig61 ID=Vaccinium_corymbosum_v1_Contig61; Name=Vaccinium_corymbosum_v1_Contig61; organism=Vaccinium corymbosum; type=contig; length=532bp
TTTTAGCGTGGTCGCGGCCGAGGTACGCGGGGATTCCATCCAATTTCATC
CAATCAACTGAAGAGATAAGAAATGGGTTCAAAAGCAATTATTTTCCTTG
CCCTTTTTCTGGCCACTGTTCTTCTCGTTACCTCAGAGGTGGCAGCCAAG
GATTTGGCTGAAACTTCCACTACTACTGAACAGACTAATGGAGTAGGTGA
CGCCAAGTATGGTGGCGGCCGTGGCGGTGGATACGGAGGTGGACATGGTG
GAGGATATGGAGGAGGGCATGGCGGCGGTGGATACGGAGGTGGACATGGT
GGAAGAGGAGGAGGCGGTCGAGGTGGCGGCGGTTATTGAGGAGGAAGCGA
ATGAATGTTACAGCAAATAAGTGTCATAAGAGTATGTATGAATAATGGAT
GATATCCAATTATGCCCTTCACATTGAGAACCATAACCTAGTTCTTCTGT
GAGGGCATGGTGTGTGTTTATCAGTCTTTGTTTCCATGTAAAAGCACGTA
CCTTTAATGATACTATGCTCTAAAGCAAAAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR010800GRP
noIPRunintegrated