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Contig Overview
Name | Vaccinium_corymbosum_v1_Contig61 |
Unique Name | Vaccinium_corymbosum_v1_Contig61 |
Type | contig |
Organism | Vaccinium corymbosum (northern highbush blueberry) |
Sequence length | 532 |
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
DW043311 | EST | DW043311:2..356 + |
DW043478 | EST | DW043478:5..418 + |
DW043165 | EST | DW043165:5..407 + |
EG026022 | EST | EG026022:1..521 - |
CV190846 | EST | CV190846:41..519 + |
DW043228 | EST | DW043228:72..521 - |
DW043365 | EST | DW043365:2..521 - |
DW043519 | EST | DW043519:5..521 - |
DW043210 | EST | DW043210:5..524 - |
CF810802 | EST | CF810802:52..530 + |
DW043259 | EST | DW043259:17..524 - |
CF810763 | EST | CF810763:52..534 + |
CF811328 | EST | CF811328:69..532 + |
CV091278 | EST | CV091278:63..528 + |
CF811042 | EST | CF811042:206..528 - |
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR010800 | Glycine rich protein | PFAM | PF07172 | GRP | coord: 2..89 score: 3.5 |
None | No IPR available | SEG | seg | seg | coord: 7..21 score: NAcoord: 47..89 score |
None | No IPR available | SEG | seg | seg | coord: 5..53 score |
None | No IPR available | SEG | seg | seg | coord: 4..50 score |
None | No IPR available | SEG | seg | seg | coord: 2..50 score: NAcoord: 56..71 score |
None | No IPR available | SEG | seg | seg | coord: 9..55 score |
None | No IPR available | PRINTS | PR01217 | PRICHEXTENSN | coord: 1..8 score: 4.7e-12coord: 12..24 score: 4.7e-12coord: 28..49 score: 4.7 |
None | No IPR available | SEG | seg | seg | coord: 1..43 score: NAcoord: 68..82 score |
Sequences
The
following sequences are available for this feature:
contig sequence >Vaccinium_corymbosum_v1_Contig61 ID=Vaccinium_corymbosum_v1_Contig61; Name=Vaccinium_corymbosum_v1_Contig61; organism=Vaccinium corymbosum; type=contig; length=532bp TTTTAGCGTGGTCGCGGCCGAGGTACGCGGGGATTCCATCCAATTTCATC CAATCAACTGAAGAGATAAGAAATGGGTTCAAAAGCAATTATTTTCCTTG CCCTTTTTCTGGCCACTGTTCTTCTCGTTACCTCAGAGGTGGCAGCCAAG GATTTGGCTGAAACTTCCACTACTACTGAACAGACTAATGGAGTAGGTGA CGCCAAGTATGGTGGCGGCCGTGGCGGTGGATACGGAGGTGGACATGGTG GAGGATATGGAGGAGGGCATGGCGGCGGTGGATACGGAGGTGGACATGGT GGAAGAGGAGGAGGCGGTCGAGGTGGCGGCGGTTATTGAGGAGGAAGCGA ATGAATGTTACAGCAAATAAGTGTCATAAGAGTATGTATGAATAATGGAT GATATCCAATTATGCCCTTCACATTGAGAACCATAACCTAGTTCTTCTGT GAGGGCATGGTGTGTGTTTATCAGTCTTTGTTTCCATGTAAAAGCACGTA CCTTTAATGATACTATGCTCTAAAGCAAAAAA back to top
Annotated Terms
The
following terms have been associated with
this contig:
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