NCSU_Chr01_3053342

Marker Overview


Name	NCSU_Chr01_3053342
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/T
5' Flanking Sequence	TACTAAAAAAATGTCATTGAGATTTCATTTTTGTACTATGGCTCTTATGATTTGGTACAT AAAAATCTGGGCATTTCATTGACGAAAGATTACAACATAT
3' Flanking Sequence	GTCATCTTTATTGAACGAAAGCAACGAATCGGAAAACAACAAGAATCTGAAGTTCACACC TTTAAATAATGATGATACAAAAGCAATCACAGTACTCATG
Species	Vaccinium corymbosum
Publication	[view all]
Contact	Massimo Iorizzo

Contact

Name

Details

Massimo Iorizzo

First name:	Massimo
Last name:	Iorizzo
Institution:	North Carolina State University
Address:	Kannapolis, NC, United States
Country:	United States
Email:	miorizz@ncsu.edu
Last update:	Aug 2021

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr01	supercontig	Vcev1_p0.Chr01:3053342..3053342 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	n/a

Publications


Year	Publication
2022	Mengist MF, Bostan H, De Paola D, Teresi SJ, Platts AE, Cremona G, Xinpeng Q, Mackey T, Bassil NV, Ashrafi H, Giongo L, Jibran R, Chagné D, Bianco L, Lila MA, Rowland LJ, Iovene M, Edger PP, Iorizzo M. Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum).. The New Phytologist. 2022 Aug 13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Blueberry-Reveille/Arlen-F1-2022	LG01	N/A	6.36	Chr01_3053342	View

Sequence

>NCSU_Chr01_3053342 ID=NCSU_Chr01_3053342; Name=NCSU_Chr01_3053342; organism=Vaccinium corymbosum; type=genetic_marker; length=201bp
TACTAAAAAAATGTCATTGAGATTTCATTTTTGTACTATGGCTCTTATGA
TTTGGTACATAAAAATCTGGGCATTTCATTGACGAAAGATTACAACATAT
YGTCATCTTTATTGAACGAAAGCAACGAATCGGAAAACAACAAGAATCTG
AAGTTCACACCTTTAAATAATGATGATACAAAAGCAATCACAGTACTCAT
G