NCSU_Chrom01_39304689

Marker Overview


Name	NCSU_Chrom01_39304689
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/A
5' Flanking Sequence	TCTGGTAAATATGGCCAGTTCACCAGAACATGTTGCTTCTTTTATCTACGAAGCACAATT TTTTCTCCTGAATTC
3' Flanking Sequence	TAGTTCTCCCTATTGCAAAAATAAACACGCTAGGATGAACGACTACTCATTTGATCAGAT ACAAACTCTCTCATG
Species	Vaccinium corymbosum
Publication	[view all]
Contact	Massimo Iorizzo

Contact

Name

Details

Massimo Iorizzo

First name:	Massimo
Last name:	Iorizzo
Institution:	North Carolina State University
Address:	Kannapolis, NC, United States
Country:	United States
Email:	miorizz@ncsu.edu
Last update:	Aug 2021

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr01	supercontig	Vcev1_p0.Chr01:39304689..39304689 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	n/a

Publications


Year	Publication
2022	Mengist MF, Bostan H, De Paola D, Teresi SJ, Platts AE, Cremona G, Xinpeng Q, Mackey T, Bassil NV, Ashrafi H, Giongo L, Jibran R, Chagné D, Bianco L, Lila MA, Rowland LJ, Iovene M, Edger PP, Iorizzo M. Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum).. The New Phytologist. 2022 Aug 13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Blueberry-DraperSelection44392/Jewel-F1	LG01	N/A	4.11	Chrom01_39304689	View

Sequence

>NCSU_Chrom01_39304689 ID=NCSU_Chrom01_39304689; Name=NCSU_Chrom01_39304689; organism=Vaccinium corymbosum; type=genetic_marker; length=153bp
TCTGGTAAATATGGCCAGTTCACCAGAACATGTTGCTTCTTTTATCTACG
AAGCACAATTTTTTCTCCTGAATTC[T]TAGTTCTCCCTATTGCAAAAAT
AAACACGCTAGGATGAACGACTACTCATTTGATCAGATACAAACTCTCTC
ATG