GWAS0000004 | GDV

Genome Location

GWAS Overview


GWAS Label	GWAS0000004 [ MapViewer ]
Published Symbol	Tetraploid-Scar_diameter-scaffold05723_761
Trait Name	Stem scar diameter
Trait Alias	N/A
GWAS Marker	scaffold05723_761
GWAS Study	Blueberry-Fruit_traits_ploidy-Ferrao-2018
Genome Assembly	Vaccinium corymbosum W8520 draft genome sequence
Statistical Mothod	linear mixed model
Experimental Model	General
GWAS Panel	N/A
LOD	N/A
P Value	<0.05
R2	N/A
Unique key	288-Tetraploid-Scar_diameter-scaffold05723_761
Allele	A/T
PVE	4.02
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Vaccinium Trait Ontology**
Term	Definition
66:Stem scar diameter	Stem scar diameter

Genome Location


Name	Type	Location	Analysis	MapViewer
scaffold05723	supercontig	scaffold05723:761..761	Vaccinium corymbosum W8520 draft genome sequence	View

Publications


Year	Publication
2018	Ferrão LF, Benevenuto J, Oliveira ID, Cellon C, Olmstead J, Kirst M, Resende Jr MF, Munoz P. Insights into the genetic basis of blueberry fruit-related traits using diploid and polyploid models in a GWAS context. Frontiers in Ecology and Evolution. 2018 Jul 24;6:107.

Properties


Property Name	Value
Unique key	288-Tetraploid-Scar_diameter-scaffold05723_761
Published symbol	Tetraploid-Scar_diameter-scaffold05723_761
Allele	A/T
P value	<0.05
PVE	4.02
Experimental model	General
Statistical method	linear mixed model